Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k17
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.24 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +1

Query: 16   GHAGNIRCFTNGRPTGRYRIRPVPRAQTGAKLPRATTSIRNAYTNAPRTATSIR 177
            G   N+    N RP   Y +R V   + GA  P  T +I  A        TSIR
Sbjct: 931  GSQQNVAGVFNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSIR 984



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 492  YYYTRNDNSLQVPYVYLVLD*THVRAKEPYGEIDLLILYTAYVTYFTT*QKVLDG 328
            YY     +S + PY++  +D +    KE + +I  L  YT Y        KV  G
Sbjct: 1012 YYVGYRLSSSEKPYMFETVDFSKEDGKEHHLQIMNLKTYTQYSVVVQAFNKVGSG 1066


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 690 QRLPHPSNRNALL-LHGRNRQGSGTYPC 610
           ++LP    ++ LL L+G NR+  G Y C
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQC 399


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 690 QRLPHPSNRNALL-LHGRNRQGSGTYPC 610
           ++LP    ++ LL L+G NR+  G Y C
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQC 399


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 62  DGTELDQYLEPRPVPNYHELQPRYGTHTLTHHV 160
           D  + D++L P P  +YH+   ++     T  V
Sbjct: 312 DHVDFDEFLPPPPNLDYHDYSRQFPRDLTTQTV 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,523
Number of Sequences: 438
Number of extensions: 5949
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)