Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22k15
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 278 5e-76
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 166 2e-42
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 156 2e-39
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 132 6e-32
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 29 0.80
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 27 3.2
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 3.2
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 4.2
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.4
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 7.4
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 25 9.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 278 bits (682), Expect = 5e-76
Identities = 129/197 (65%), Positives = 151/197 (76%)
Frame = +2
Query: 68 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 247
FW I++EHG+D G+Y GTS+ Q ER++VY+NEA+ GGKYVPRA+L+DLEPGTM
Sbjct: 20 FWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA------GGKYVPRAVLVDLEPGTM 73
Query: 248 DAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGF 427
DAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL DAVLDVVR+E E CD LQGF
Sbjct: 74 DAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGF 133
Query: 428 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLV 607
Q KIREEYPDR+M T+SV P+PK SDTVVEPYNA LS+HQLV
Sbjct: 134 QLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLV 193
Query: 608 ENTDETYCIDNEALYDI 658
EN+DET+CIDNEAL I
Sbjct: 194 ENSDETFCIDNEALSSI 210
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 166 bits (404), Expect = 2e-42
Identities = 82/201 (40%), Positives = 121/201 (60%), Gaps = 2/201 (0%)
Frame = +2
Query: 71 WEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA-SVATAESG-GKYVPRAILLDLEPGT 244
WE+ EHGI P G T + ++ + + Y N+ +E+G GK+VPR+I +DLEP
Sbjct: 21 WELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNV 78
Query: 245 MDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQG 424
+D VR+G Y LF P+ V G+ A NN+A+GHYT G E++D+VL+ +R+ +NC LQG
Sbjct: 79 IDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQG 138
Query: 425 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQL 604
F ++ EY + +SV P+P+VS +VVEPYN+VL+ H
Sbjct: 139 FLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHAT 198
Query: 605 VENTDETYCIDNEALYDICYR 667
++N+D T+ +DNEA YDIC R
Sbjct: 199 LDNSDCTFMVDNEACYDICRR 219
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 156 bits (379), Expect = 2e-39
Identities = 80/201 (39%), Positives = 111/201 (55%), Gaps = 2/201 (0%)
Frame = +2
Query: 71 WEIISEEHGIDPTGVYRGTSDLQLER--ISVYYNEASVATAESGGKYVPRAILLDLEPGT 244
WE+ EHGI P G + Q S +++E GKYVPR+I +DLEP
Sbjct: 21 WELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ------GKYVPRSIYVDLEPNV 74
Query: 245 MDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQG 424
+D VR+G Y LF P+ + G+ A NN+A+GHYT G ELVD V D +R+ +NC LQG
Sbjct: 75 IDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQG 134
Query: 425 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQL 604
F ++ EY + +SV P+P+VS +VVEPYN+VL+ H
Sbjct: 135 FLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHAT 194
Query: 605 VENTDETYCIDNEALYDICYR 667
++ D T+ +DNE+ YDIC R
Sbjct: 195 LDLADCTFMVDNESCYDICRR 215
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 132 bits (318), Expect = 6e-32
Identities = 67/200 (33%), Positives = 109/200 (54%), Gaps = 3/200 (1%)
Frame = +2
Query: 68 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 247
FW+ + EHGI P G + ++R V++ ++ +Y+PRAIL+DLEP +
Sbjct: 21 FWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDT------RYIPRAILIDLEPRVV 74
Query: 248 DAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQ 421
+ + S YG L+ P+N + ++ GAGNNWA G Y+ + + ++D++ +E + D L+
Sbjct: 75 NNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLE 133
Query: 422 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNAVLSIH 598
GF ++ + YP +I+ TYSV P S VSD VV+PYN++L++
Sbjct: 134 GFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALK 193
Query: 599 QLVENTDETYCIDNEALYDI 658
+L N D +DN AL I
Sbjct: 194 RLTLNADSVVVLDNAALAHI 213
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 28.7 bits (61), Expect = 0.80
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 332 AKGHYTEGAELVDAVLDVVRKECENCDCLQ 421
A+GH G ELV A D +RK+ EN L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 44 ISYSSSYNFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNE 169
+SY+ S E+ S HG D T ++ LER+ +E
Sbjct: 63 VSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASE 104
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 47 SYSSSYNFWEIISEEHGIDPTGVYR 121
SY+ +Y FW + E G+ VY+
Sbjct: 361 SYTKAYQFWHNLREPEGVPAEEVYK 385
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 122 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 235
G+SD+ + +S + EAS + S VP+ +L D +
Sbjct: 49 GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 530 SVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDI 658
SV SPK + Y AV +IH++ +T + E LY I
Sbjct: 272 SVYESPKFYLAKGDDYKAVETIHKIARINGKTCTLTVEELYAI 314
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 263 GAYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 364
G YG +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 9.8
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = +2
Query: 107 TGVYRGTSDLQLERISVYYNEASVATAESGGKYV------PRAILLDLEPGTMDAVRSG 265
TGV R L +E +V + + A SGG Y R I+L+ EPGT + G
Sbjct: 250 TGVARTGKMLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGG 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,383
Number of Sequences: 5004
Number of extensions: 38527
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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