Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k13
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0580 + 4305984-4307282,4308610-4308678                           31   0.81 
06_01_1017 - 7951985-7952425                                           29   3.3  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    29   4.3  

>01_01_0580 + 4305984-4307282,4308610-4308678
          Length = 455

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 353 AWSSMSQKKAGSLWKKTPTPRM 288
           AWSS++ KK+G  W K+  PR+
Sbjct: 179 AWSSLTMKKSGGEWVKSSIPRL 200


>06_01_1017 - 7951985-7952425
          Length = 146

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 380 RPYSPRWALAWSSMSQKKAGSLWKKTPTPRMRRVFLPGPG 261
           RP+ P WA A ++ +       W +TPT  + R+ +PG G
Sbjct: 17  RPFPPDWASASATAAMD-----WVETPTSHVLRINVPGLG 51


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 362 WALAWSSMSQKKAGSLWKKTPTPRMRRVFLP 270
           WA  W    QK+AG+ +K+ P       FLP
Sbjct: 18  WATEWGGAKQKEAGTPFKRLPFYCCALTFLP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,653,235
Number of Sequences: 37544
Number of extensions: 297762
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)