Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k10
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    29   0.71 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.9  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   3.8  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    27   3.8  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.0  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   6.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.6  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   8.7  

>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +2

Query: 170 NIVRENYLQAVRMR-RTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYL 346
           N++ +  ++  R++ + + EK++   V+++LESV+   T Q +   +   +   I E+  
Sbjct: 21  NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVK---TKQISSSASSKVSSNTIQELDS 77

Query: 347 ETDMNRNLGDDQVHVHAPKGIVPGQTHN 430
            TD +   G D V    P    P    N
Sbjct: 78  TTDEDEIPGSDTVDEEDPSLNAPFSEKN 105


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 218  IEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDMNRNLGDD 379
            ++EK  + S D DLE +  +A ++N +  A +  +E + +     + N  L +D
Sbjct: 4092 LDEKEGDVSKDSDLEDMDMEAADENKE-EADAEKDEPMQDFEDPLEENNTLDED 4144


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 VEKAIKAANAAGLTLTKIPTYEYKQKEIKEDMPTIHD 660
           ++K IK      L + KIP Y+Y  + +    P   D
Sbjct: 272 MQKEIKYLRKRKLQIRKIPNYKYSDRSLNSKTPKSQD 308


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -1

Query: 280 GLTLNALEISIYACVYSFFFDRTTHPNCLKIVFSHDIYFSRGAFSLSCN*AIGYPIRYLT 101
           G  L  +++ +    Y   F     PNC  ++ + D  F      L  + AI YP+ + T
Sbjct: 152 GAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTFPTNGKFLPGSGAISYPLIFST 211


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 179 RENYLQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDM 358
           R N +  +  + TIE  +  T V ++ +++   A NQN Q+      ++      +E+ +
Sbjct: 54  RSNKISPITSQLTIEPNKSQTIVKKNPDNLIFVAVNQNVQLQLSILKQQQNRVAAMESAL 113

Query: 359 NR 364
            R
Sbjct: 114 QR 115


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 404 GIVPGQTHNVDP 439
           GI+PG THNV P
Sbjct: 281 GIIPGATHNVGP 292


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 451 YFYIWIYIVSLTWNYPFWSVN 389
           YFY +  +V +T  YP W+ N
Sbjct: 10  YFYFFPLLVFITLQYPRWTFN 30


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 466 IFLISYFYIWIYIVSLTWNYP 404
           ++LIS+F+  IY+VSL + +P
Sbjct: 3   VYLISFFFTAIYVVSL-YTFP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,859
Number of Sequences: 5004
Number of extensions: 47404
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)