Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k10
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953     32   0.42 
12_01_0296 + 2240376-2240580,2241556-2241764,2241847-2241975,224...    31   0.74 
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    30   2.3  
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656...    28   6.9  
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967...    28   9.1  
02_01_0100 + 743467-744868,745066-745127                               28   9.1  

>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
          Length = 473

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 326 VILEVYLETDMNRNLGDDQVH-VHAPKGIVP---GQTHNVDPNIKVRNQKDHAPGVDQV 490
           +++   ++ D    LGD+  + +  P+ +VP   G+  N DP+ +V   KD  PG D+V
Sbjct: 101 ILVLAIVKDDPAEELGDENANPLPGPEKVVPDPNGELPNKDPDEEVVTPKDTVPGPDEV 159


>12_01_0296 +
           2240376-2240580,2241556-2241764,2241847-2241975,
           2242271-2242417,2243045-2243108,2243208-2243311,
           2243373-2243411
          Length = 298

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 197 AVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDM 358
           A ++RR  E+  + TSVD +L  V++  TN      +   N+  IL++Y ET++
Sbjct: 61  AGKLRRRREDWSLFTSVDENLNHVRT--TNHIETCKSTGPNDAAILDLYKETEL 112


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 529 LEDTETEVEKAIKAANAAGLTLTK----IPTYEYKQKEIKEDMPTIHDRNLLLELDSD 690
           L +TET +E+ ++    A + +      +  +  K + ++ED+ +I  RN  LEL SD
Sbjct: 249 LMETETVIEEVLEGLEIASICVEDFDEWLGIFNVKLRHMREDIQSIEWRNNKLELQSD 306


>01_06_0772 -
           31864564-31864653,31864733-31864816,31865547-31865603,
           31865700-31865828,31866704-31866790,31866856-31866933,
           31867150-31867306,31868000-31868141,31868835-31868986,
           31869118-31869371,31869819-31869896
          Length = 435

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 200 LLEDSFLSRYLLFSRGIFLVL*LSYRLSHTVPNNFIINYRTITST--HSMF*SYFLIIV* 27
           LL   F    +LF+ G FL    S +L +TV ++ ++ Y+ ++    + MF  YFL I  
Sbjct: 108 LLNWHFFFTAMLFTYGRFL----SRQLVNTVTSDHLL-YKVVSGLIKYQMFICYFLYIAG 162

Query: 26  YVW 18
           +VW
Sbjct: 163 FVW 165


>03_05_0813 -
           27894593-27894915,27896164-27896422,27896513-27896728,
           27896920-27897625,27897895-27898100
          Length = 569

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 539 LKQKWKRPSKLQMLQASH*PRSPHMNTSKKR 631
           L + W+R +K  +L+A   P  PH+  +KKR
Sbjct: 131 LAKSWERLAKSLLLRAKPQPVLPHVRAAKKR 161


>02_01_0100 + 743467-744868,745066-745127
          Length = 487

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 725 LFXEVNVFCTNESLSNSSNKFLSCMVGMSSLISFCL 618
           ++ E   + + +++SNS+  F +   G+S  +SFCL
Sbjct: 41  VYLEDRAYVSPDAVSNSTTAFSTTTTGVSIHVSFCL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,083
Number of Sequences: 37544
Number of extensions: 256163
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)