Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k10
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    29   2.7  
Z66523-9|CAE17856.1|  271|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U97005-7|AAB52285.2|  195|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
           family protein 4 protein.
          Length = 1802

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -1

Query: 313 ALSVNLSVLICGLTLNALEISIYACVYSFFFDRTTHPNCLKIVFSHDIYFSRGAFSLSCN 134
           AL  +++++   L + A ++  +A + S F +  T    + +VF   +YF    FS S +
Sbjct: 390 ALKSDMTLMFVFLMIYAFDVVYFAFMISSFMNSATSATLISVVFWMLLYFWYAFFS-SID 448

Query: 133 *AIGYPIRYLTI 98
               YP+ Y  I
Sbjct: 449 QTNPYPLGYRLI 460


>Z66523-9|CAE17856.1|  271|Caenorhabditis elegans Hypothetical
           protein M05D6.9 protein.
          Length = 271

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 230 RVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDMNR--NLGDDQVHVHAPK 403
           R+    D D +S    +T++ + V      +EV+ +       N   N+G D V+ H   
Sbjct: 39  RIQKEYDEDYDSTDDSSTSRKSSVDGSRRRDEVVNDAKCLQKCNNQLNIGMDMVNAHMAF 98

Query: 404 GIV 412
           G +
Sbjct: 99  GSI 101


>AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical
           protein H27M09.3 protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 285 IKTLKFTLKAQTKKSFSKCI 344
           I+T K TLKA++KKSF K +
Sbjct: 199 IRTKKATLKAESKKSFEKTV 218


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 331 NDFFVCALSVNLSVLICGLTLNALEISIYACVYSFFFDRTTHPNCLKIV 185
           N +++C L+ +L   I  +T + L I+       F F    HP  LK V
Sbjct: 248 NSYYLCKLNEDLWFQIVTVTFSFLTITALDGFVMFVFQEDIHPKFLKQV 296


>U97005-7|AAB52285.2|  195|Caenorhabditis elegans Hypothetical
           protein F19F10.7 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +2

Query: 128 SSITRQGKCPARKVNIVRENYLQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHA 307
           S+ TRQ +CP ++  I  EN+   +          V  SV    E  +    N N Q+  
Sbjct: 19  STTTRQKQCPDKRFTIFDENWCFLI----------VFNSVINSEEKAKILCNNSNAQLSG 68

Query: 308 QSTNEEVI 331
             T+EE++
Sbjct: 69  PETDEELV 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,153
Number of Sequences: 27780
Number of extensions: 265714
Number of successful extensions: 848
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)