Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22k07
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551... 87 1e-17
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996... 31 1.1
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 29 4.3
09_04_0387 - 17197626-17197785,17198095-17198213,17198751-171988... 28 7.5
09_02_0191 + 5571287-5571355,5571481-5571699,5571755-5571811,557... 28 7.5
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 28 7.5
04_03_0008 + 9296711-9298096 28 7.5
02_05_1082 - 33976038-33978035 28 7.5
07_03_0105 + 13455906-13457198 27 9.9
>03_06_0175 +
32152428-32153423,32153692-32153889,32154942-32155121,
32156224-32156481,32157310-32157381
Length = 567
Score = 87.0 bits (206), Expect = 1e-17
Identities = 42/100 (42%), Positives = 60/100 (60%)
Frame = +3
Query: 336 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTE 515
DG A F+ TY+D + LPGYI F A+ VDL++ L+++I L P V++PMDTV+E
Sbjct: 11 DGFPAPRLFSQGVSYTYDDVIFLPGYIGFPADAVDLSTRLSRRIPLSIPCVASPMDTVSE 70
Query: 516 ADMAISMALCGGIGIIHHNCTPEYQANEVHKVKKYKHGFI 635
A MA +MA G ++H N P QA+ V K + F+
Sbjct: 71 AAMAAAMASLGAAAVVHCNTEPHLQASIVRAAKSRRLPFV 110
>03_05_0207 -
21985340-21985570,21986430-21986636,21999578-21999667,
21999764-21999945,22000130-22001042,22003184-22003266,
22004622-22004939,22005044-22005107
Length = 695
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = -3
Query: 562 IMPIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLY 383
I+P+PP S IGV +N++ VK ++ + + KK Y
Sbjct: 157 ILPLPPMDHSSSEESDVSDSDIGVHEEKTYNQLRAEKVKVKHGNNTFRCPFCPGKKKQDY 216
Query: 382 VSPSLLAKVSSADNPSRRSPSV 317
S LL S S+R V
Sbjct: 217 SSKDLLQHASGVGAASKRKAKV 238
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/74 (20%), Positives = 32/74 (43%)
Frame = +3
Query: 393 FLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTEADMAISMALCGGIGIIHHN 572
+L++ ++D T E + + + + PL+ D V D + + ++H N
Sbjct: 1028 YLVMHSFLDITWEHYLVCPQIVPRGFVLGPLLRGLNDVVHHKDFEFEVEILKNTALLHQN 1087
Query: 573 CTPEYQANEVHKVK 614
++A+ V K K
Sbjct: 1088 YLAIFRADSVPKPK 1101
>09_04_0387 -
17197626-17197785,17198095-17198213,17198751-17198857,
17199000-17199078,17199210-17199551,17199695-17199847,
17199949-17200267,17200457-17200680
Length = 500
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 629 SMLILLHFVNFISLVFWSTVVVYNANSTAKRHGYGH 522
S +I++ FISL F V Y + K HGYGH
Sbjct: 4 SFVIVIVISFFISLAFMC-YVHYTSRQRRKLHGYGH 38
>09_02_0191 +
5571287-5571355,5571481-5571699,5571755-5571811,
5571988-5572047,5572088-5572117
Length = 144
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 647 NGVSNKSMLILLHFVNFISLVFWSTVVVYNANSTAKRHGYGHVSFC 510
+G K +LI FI++ W T +++ + HG HVSFC
Sbjct: 91 SGSKTKFILIPYGLAMFITIENWKTK---SSDHNVQSHGMYHVSFC 133
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 495 PMDTVTEADMAISMALCGGIGIIHHNCTPEYQANEVHKVKKYKHGFIRDPVCMG 656
P TV D ++ +CGG+G ++C PE + ++ +GF +G
Sbjct: 28 PQGTVKALDSHVTCEVCGGMGHSGNDC-PETREEAMYMGNNNNNGFRPQGAALG 80
>04_03_0008 + 9296711-9298096
Length = 461
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 495 PMDTVTEADMAISMALCGGIGIIHHNCTPE 584
P DTV D+ ++ +CGG G ++C PE
Sbjct: 131 PQDTVKALDLHVTCEVCGGTGHSGNDC-PE 159
>02_05_1082 - 33976038-33978035
Length = 665
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 655 PMQTGSLINPCLYFFTL*TSLAWYSGVQLW 566
P G+LI L+F+ + LA Y GV++W
Sbjct: 393 PASRGTLITGMLFFYLVLGILAGYVGVRVW 422
>07_03_0105 + 13455906-13457198
Length = 430
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 477 APLVSTPMDTVTEADMAISMALCGGI 554
A STP DT+ A S+ LCGG+
Sbjct: 251 AAAFSTPYDTIARHTDAKSVVLCGGV 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,563
Number of Sequences: 37544
Number of extensions: 291121
Number of successful extensions: 874
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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