Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k05
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    30   0.28 
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    27   2.6  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    26   5.9  

>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 263 FIFCSLYKSQHWFLLYAIWLMFKRL*NFKLKPIHERLSYHVYDV 394
           F++  +Y    WFL YA W++ + L N  + PI E + Y + D+
Sbjct: 190 FLWSIVYLHVIWFLYYACWILSEGL-NV-ISPIGEAIFYSILDL 231


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 383 VYDVRKQMEMIFLFNYFFPLMYVCL*SLYF*IKYTFYETDATLSFDIYNFMTFKLNG 553
           +Y V+ +++  F  NY F    +C+  LYF I Y F    A L+  +  F++F ++G
Sbjct: 46  MYAVKPRIQKNFQDNYRFYGTLLCICWLYFFIWYPF----ALLALMVGVFLSFVMHG 98


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 264 LFSVRCTKVNIGFYYTQFGLCSSDYRILNLNPFTKGSHI 380
           LF+      N GFY     L +    I+NL P+  G+ I
Sbjct: 20  LFNYHFDFSNFGFYLGLSALIAISLAIINLTPYGSGAKI 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,782
Number of Sequences: 5004
Number of extensions: 55382
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)