Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k05
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43375-3|AAA83620.1|  110|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U00058-5|AAA50730.1|  309|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U43375-3|AAA83620.1|  110|Caenorhabditis elegans Hypothetical
           protein K09C4.7 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 180 ECRWHLSWHRERVTSTLFN 124
           +C W L WHR R +  L N
Sbjct: 69  KCSWQLPWHRSRYSKDLLN 87


>Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical
           protein F44D12.9 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 401 QMEMIFLFNYFFPLMYVCL*SLYF*IKYTFYE 496
           ++  +  F+     M VCL SLYF ++  FY+
Sbjct: 207 ELNALLYFSISLAFMIVCLFSLYFLVRLPFYQ 238


>U00058-5|AAA50730.1|  309|Caenorhabditis elegans Hypothetical
           protein W03A5.4 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 7   TEPALYHALTSVLSEDQKKQLSAVFVLADQRKAQMDSRRIE 129
           T P        ++SE+ +K+L+    LA+QR+A+M ++ ++
Sbjct: 250 TRPVTAKKKAPIVSEETRKKLAEQKALAEQRRAEMRAQILQ 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,795
Number of Sequences: 27780
Number of extensions: 313700
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)