Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k03
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    27   0.50 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   0.86 
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   1.5  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    25   2.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   2.6  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    24   6.1  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    24   6.1  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    24   6.1  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   8.1  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    23   8.1  

>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 125 ILADPWLNPNQQSKHDETDLQEHAKTSKEEIKSVNIGT-VTYD 250
           +++DP L    Q+K D TD+ +H     + I+  NI T +T+D
Sbjct: 100 VVSDPQLQDGMQAKWDPTDVAKHI---SQIIERYNIKTLITFD 139


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 5   LLKQVQNKVSFPREPKVSAECRKLITR-ILAPLKMRVKIPQILADPWLNPN 154
           L K+V N   +     +S   + LI R I+A    R+ I +I  DPW N N
Sbjct: 239 LFKKV-NSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVN 288


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 143 LNPNQQSKHDETDLQEHAKTSKEEIKSVNIGTVTYD 250
           +NP  ++K    ++  H K+SK   K+V+ G +T D
Sbjct: 116 VNPASRNKSQSNNISSHEKSSK-TTKNVSPGVMTSD 150


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 255 FLSYVTVPMLTLFISSLLVFACSCKSVSSCLDCWLGLSH 139
           F   + VP L+  +  +L    S ++    L+C  GL+H
Sbjct: 128 FYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 312 FFFENCLYFGFKTYLTSSNFLS 247
           FFFE+  +F   +YL  SNF S
Sbjct: 222 FFFESAHFFAQCSYLKKSNFPS 243


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 91  SPIKNASKDPSDS 129
           SP+KN+SK P+D+
Sbjct: 407 SPLKNSSKSPNDN 419


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 101 KMRVKIPQILADPWLNP 151
           + R+ IP++L  P+LNP
Sbjct: 589 RKRLTIPELLVHPFLNP 605


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  NKVSFPREPKVSAECRKLITRIL 91
           N  SFP    +SAE + LI+ +L
Sbjct: 255 NSYSFPSNVDISAEAKDLISSLL 277


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 12  SKFKIKYHFPVNL 50
           SKF +K HFP N+
Sbjct: 98  SKFNVKIHFPSNV 110


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 104 MRVKIPQILADPWLNPNQQSKHDETDLQEHAKTSKEEIKSVNIGTV 241
           +R+K  ++L  PW+  NQ S      + E  K + E +K   +  +
Sbjct: 246 LRIKTRKLLKHPWVIMNQTSSKFSDAIDEVQKYN-ERVKESTLTAI 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,912
Number of Sequences: 5004
Number of extensions: 22717
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)