Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k02
         (136 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0349 + 15032131-15033117                                         27   1.6  
06_01_0768 + 5742938-5743196,5743291-5744729                           27   2.8  
06_01_0763 + 5712466-5712721,5714302-5715743                           26   3.7  
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857...    26   3.7  
02_05_0848 + 32195610-32195625,32196078-32197585                       26   4.9  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    26   4.9  
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938     25   8.5  

>06_02_0349 + 15032131-15033117
          Length = 328

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 18  NLCTSSKFTLSPKNVFILFD 77
           +L TS++F+LSP+N ++ FD
Sbjct: 108 SLDTSTRFSLSPRNDYLFFD 127


>06_01_0768 + 5742938-5743196,5743291-5744729
          Length = 565

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 4   IWXHEIYVRRRNSLCPQKMSLFYLISFLLFHP 99
           ++ +  Y    + L P+K S+FYL++  L HP
Sbjct: 307 LFLNPAYQDELDRLFPRKDSVFYLLAHYLLHP 338


>06_01_0763 + 5712466-5712721,5714302-5715743
          Length = 565

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   IWXHEIYVRRRNSLCPQKMSLFYLISFLLFHP 99
           I+ +  Y    + + P K ++FYL+S  L HP
Sbjct: 306 IFLNPAYKEELDMMFPNKDAVFYLLSRYLLHP 337


>05_03_0115 -
           8544590-8544958,8545408-8545503,8561954-8562505,
           8576247-8576312,8576623-8576694,8576967-8577082,
           8577743-8577838,8578498-8578765
          Length = 544

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 1   DIWXHEIYVRRRNSLCPQKMSLFYLISFLLFHPN 102
           D W +E+   + N +   +    YL+    FHPN
Sbjct: 164 DRWYYEVITSKSNKVAAGQDKSRYLVDSSYFHPN 197


>02_05_0848 + 32195610-32195625,32196078-32197585
          Length = 507

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 22  YVRRRNSLCPQKMSLFYLISFLLFHPN 102
           Y R    L P+K ++F+ ++  LFHP+
Sbjct: 254 YERELTQLFPEKEAVFHHLARYLFHPS 280


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  IYVRRRNSLCPQKMSLFYLISFLLFHP 99
           +Y +    + PQK S+F+ +   LFHP
Sbjct: 414 MYEKELEKMFPQKESVFHHLGRYLFHP 440


>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
          Length = 574

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 22  YVRRRNSLCPQKMSLFYLISFLLFHPNYCATXKXTXY 132
           Y      L PQ+ S+F+ +   LFHP+       T Y
Sbjct: 323 YQEELTRLFPQRDSVFHHLGRYLFHPSNVVWGMVTRY 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,207
Number of Sequences: 37544
Number of extensions: 34416
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)