Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k01
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 85  CYCWL*DGSGGPIRSNQNVNRAKLKWCTGSALITTSCRGSG 207
           C CW  D  GGP  S+       +   +G +++  +  G G
Sbjct: 11  CCCWCCDNLGGPGSSSAG---GVVTGASGGSIVVGANNGGG 48


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 603 VTELRHRKEPHLPRPNPAASLVIKTSP 683
           + ++R ++EPH P    A +++ K  P
Sbjct: 108 IEQVRTKEEPHAPYRYEAVAVIHKDLP 134


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 603 VTELRHRKEPHLPRPNPAASLVIKTSP 683
           + ++R ++EPH P    A +++ K  P
Sbjct: 108 IEQVRTKEEPHAPYRYEAVAVIHKDLP 134


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 QSCQAQVVHRLCPHHNVVQG 200
           +SC  + +  LCPH NV  G
Sbjct: 434 ESCLPEEI--LCPHFNVTDG 451


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 603 VTELRHRKEPHLPRPNPAASLVIKTSP 683
           + ++R ++EPH P    A +++ K  P
Sbjct: 108 IEQVRTKEEPHAPYRYEAVAVIHKDLP 134


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 515 GRFPVQSLTESHL 477
           GRFP QSLT+  L
Sbjct: 343 GRFPPQSLTDMWL 355


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 264 QQVFW*VHPGAHRGCPSAPA 205
           QQ+F   +PG  + C ++PA
Sbjct: 16  QQLFSSANPGTIQACTTSPA 35


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 515 GRFPVQSLTESHL 477
           GRFP QSLT+  L
Sbjct: 311 GRFPPQSLTDMWL 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,443
Number of Sequences: 438
Number of extensions: 4221
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)