Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j24
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    30   1.9  
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243...    28   7.5  
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172...    27   9.9  

>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +1

Query: 424 EPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFIVLKSTNSSKFSS 597
           +  P  +  E +   +K E++  M ++    F SK+L+++YD+N    K+TN++  SS
Sbjct: 387 QKCPATAPSEYVSTPSK-EQSSQMEHQGSLNF-SKLLDQSYDENADTSKTTNANTSSS 442


>03_06_0495 +
           34323082-34323173,34323600-34323742,34324265-34324315,
           34324405-34324626,34324731-34324833,34325156-34325552,
           34326564-34326735,34326995-34327089,34327246-34327455
          Length = 494

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 424 EPAPDKSGEEIIPKTTKIERA--KAMNNEKKSKFKSKILNRNYDDNFIVLKSTNSSKFSS 597
           +P PD + +E   K  +I+ A    MN+E +SK+ S   N  Y        ST S+    
Sbjct: 332 QPPPDPNAQE---KFLRIKHAYNTLMNSESRSKYASTSSNTYYSSRTYGKSSTTSADEEE 388

Query: 598 P 600
           P
Sbjct: 389 P 389


>07_03_0876 -
           22215688-22215789,22216051-22216206,22217227-22217247,
           22217311-22217580,22217793-22219178,22220562-22220621
          Length = 664

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 LKTLPNQITRRRDNKQFLSSVLNILSKGTT 408
           L T+   +T  RD +QFLSS++  + +G T
Sbjct: 192 LPTMEGIVTNARDTRQFLSSIVWSIWEGVT 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,139
Number of Sequences: 37544
Number of extensions: 228031
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)