Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j21
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    48   1e-06
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    47   3e-06
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    37   0.003
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    34   0.019
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    29   0.54 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.54 
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    26   5.0  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   5.0  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.8  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
 Frame = +2

Query: 428 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAAA 607
           F    +  AI  YT   +  P     F  R   YLK+  P  CI+DC  A+EL+ + A A
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKA 469

Query: 608 YKFRGRAYRLLGKFEESSHDLCESLKID-YDDQTNEWLNEVK 730
           Y  + +A  +L  + +      E+ ++D  +  T + L E++
Sbjct: 470 YVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIE 511


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 28/90 (31%), Positives = 42/90 (46%)
 Frame = +2

Query: 422 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 601
           +A+ +++Y  AI+ YT AI  +    + F+ R   Y  +      IKD + AL L+    
Sbjct: 160 KAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAACYAAIGDFEQVIKDTSEALSLDSSYV 218

Query: 602 AAYKFRGRAYRLLGKFEESSHDLCESLKID 691
            A   R  AY  LGK +E+  D   S   D
Sbjct: 219 KALNRRSAAYEQLGKLDEALMDSTVSCIFD 248


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +2

Query: 434 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 589
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+   +D  H+LEL+
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELD 105


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +2

Query: 428 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 601
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +    + D   +  +  D  
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPDVP 93

Query: 602 AAYKFRGRAYRLLGKFEES 658
                  +AY  L    E+
Sbjct: 94  KTQSRIRQAYEGLSILNEA 112



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +2

Query: 515 RGQVYLKLNKPNACIKDCTHALELNCDSAAAYKFRGRAYRLLGKFEESSHDLCESLKIDY 694
           + QVY+  N  +   K     L LN  +  A   RG+     G+  ++     E+LK+D 
Sbjct: 149 KAQVYIFQNDMDRAQKIAHDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDP 208

Query: 695 DDQTNEWL 718
           D  T + L
Sbjct: 209 DCTTAKTL 216


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 554 CIKDCTHALELNCDSAAAYKFRGRAYRLLG-KFEESSHDLCESLKIDYDDQTNEWLNEVK 730
           C ++  ++L    D+A  Y F  + YRL    FE  SH   ESL       TN W    +
Sbjct: 348 CTQETVYSLLTGNDTACVYPFPNKPYRLPDVDFEIFSHCSFESL-TTVTTNTNIWWVWAE 406

Query: 731 PKC*KI 748
            +C +I
Sbjct: 407 SRCTEI 412


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 606 AAALSQFNSKACVQSLIHAFGLFSFRYTCPRLANNKALCGFNCMAAVYRLIASSYFCSEN 427
           A  +SQF  K   +  IH + L    Y+      N  LC F  +  +   + SS F  ++
Sbjct: 713 AKFISQFLEKTSTEFQIHLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSSSFSIQD 772

Query: 426 A 424
           A
Sbjct: 773 A 773


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 593 DSAAAYKFRGRAYRLLGKFEES-SHDLCESLKID 691
           +S   YKF    ++L G  EES  + LC+SL  D
Sbjct: 190 ESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKD 223


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 614 FRGRAYRLLGKFEESSHDLCESL 682
           FRGRAY L       S+D+C  L
Sbjct: 668 FRGRAYPLSSHLHHVSNDVCRGL 690


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 80  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 205
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,772
Number of Sequences: 5004
Number of extensions: 54085
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)