Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22j20
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 33 0.033
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 31 0.099
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 30 0.30
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 28 0.93
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 28 1.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 1.2
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.2
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 2.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.1
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.8
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 27 2.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 3.7
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 26 3.7
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 26 4.9
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 6.5
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 8.6
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 8.6
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 8.6
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 33.1 bits (72), Expect = 0.033
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -3
Query: 357 SGRDLLRLFRSTVFISFFPIGFGTSARTRAISSPLTPEYEVKD 229
S RD + RS+ +S PI RT +I +PLTP Y V D
Sbjct: 149 SSRDSANVSRSSSMMSSHPIPTPAIQRTSSIPNPLTPSYVVFD 191
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 31.5 bits (68), Expect = 0.099
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +2
Query: 143 TSKKDSQNENSDHDTREKNPNDPGSECSWSLTSYSGVSGLDMARVRADVPKPIGKKEMKT 322
+S D Q S+ D +N S SWS +++ +G + R R + +P+ K
Sbjct: 175 SSVDDHQEFESEDDKYRRN-----SYSSWSGSNFESSNGSNRRRYRTQMEEPLSSKRRNR 229
Query: 323 VDRKSRRRSRPEKHRH 370
SRR K+ H
Sbjct: 230 FGNGSRRDVDSSKYSH 245
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 ISYILKRMGMGDESNKEAEPNTSKK-DSQNENSDHDTREKNPNDPG 214
I + +K + DES++ A PN ++ D E D D + + ND G
Sbjct: 141 IDFTIKAQDLKDESSEAAHPNIEEEPDEGLEEEDEDFGDDDDNDYG 186
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 28.3 bits (60), Expect = 0.93
Identities = 25/117 (21%), Positives = 49/117 (41%)
Frame = +2
Query: 80 ISYILKRMGMGDESNKEAEPNTSKKDSQNENSDHDTREKNPNDPGSECSWSLTSYSGVSG 259
IS + R E +K ++++++S+ E++ +D+RE+N S + + S
Sbjct: 142 ISKLKDRTEASKEESKTVTDHSNRRESRRESTYYDSRERN-GKRTSRSTLDRKRFHDASD 200
Query: 260 LDMARVRADVPKPIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQ 430
+ R P P + K + RS H+ + R R RR+ +R +
Sbjct: 201 TERNRYGRS-PSPHSRFSEKPRGERYDIRSYSRSHKE-RYEDRYRPTRRRERHYRTR 255
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 27.9 bits (59), Expect = 1.2
Identities = 27/116 (23%), Positives = 45/116 (38%)
Frame = +2
Query: 116 ESNKEAEPNTSKKDSQNENSDHDTREKNPNDPGSECSWSLTSYSGVSGLDMARVRADVPK 295
E+NK+ +T + N D K +DP E S T S L+ + A+V
Sbjct: 6 ENNKDESISTKNALEEKSNETKDETSKRKHDPAEEESAVSTKVSKSEPLE-DKGNAEV-- 62
Query: 296 PIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTRKRD 463
KE K + + + E K+ K +E +V+++ KV + D
Sbjct: 63 ----KEFKETTKSNGVKPEVEITESTKIQKESNTEPCISTGGKVEEKELKVNKDVD 114
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 313 NEDSRSEEPEKITAGEASSRQSE*EKAFGDET 408
N +++ E +K +AGE S E +K GD T
Sbjct: 225 NTSAKAFENQKGSAGETKSEPKEADKGSGDST 256
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.9 bits (59), Expect = 1.2
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Frame = +2
Query: 80 ISYILKRMGMGDESNKEAEPNTSKKDSQNENSDHDTREKNPNDPGSECSWSLTSYSGVSG 259
IS + R S+K E TS + NE+ + +++ + + S S S
Sbjct: 845 ISNVSHRERSNSVSSKSRETRTS---ASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSK 901
Query: 260 LDMAR-VRADVPKPIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQ 412
D A+ ++ P+P K T D KS +R+ E + + +RQ
Sbjct: 902 SDAAKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQ 953
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 119 SNKEAEPNTSKKDSQNENSDHD 184
+NKEA PNT + Q +N + D
Sbjct: 165 NNKEAHPNTEENKEQEDNEEDD 186
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 290 PKPIGKKEMKTVDRKSRRRSR---PEKHRHGKVNKRKRSETRRQLVHRVQKRRPKV 448
P P+ K++MK + +K + +R E R+ + RRQL+ QK R +V
Sbjct: 627 PSPLTKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRELAARRRQLISEWQKYRDEV 682
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.1
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +2
Query: 119 SNKE-AEPNTS-KKDSQNENSDHDTREKNP--NDPGSECSWSLTSYSGVSGLDMARVRAD 286
SNKE + P S DSQ++N++H + NP N+P S TS + SG + +
Sbjct: 108 SNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNP------SHTSRNPDSGSSLNTASHE 161
Query: 287 VPKPIGKKEMKTVDR-KSRRRSR 352
VP ++ + R KS+ R +
Sbjct: 162 VPSSKSDVNVQMLARLKSKSRQK 184
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 2.8
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 20/122 (16%)
Frame = +2
Query: 95 KRMGMGDESNKEA----EPNTSKKDSQNENSDHDTREK--NPNDPGSECSWSL------- 235
+R G+G +S K+ E K NEN+ D + + +DP +E +
Sbjct: 353 RRWGLGPQSMKKKTLKKEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAA 412
Query: 236 -TSYSGVSGLDMARVRADVPKP------IGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKR 394
T + V+G++ ++ R V KKE K +++++ + +K + K K+K+
Sbjct: 413 PTVEAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
Query: 395 SE 400
SE
Sbjct: 473 SE 474
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 335 SRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTRKRDLS 469
S RRSR + K ++ +R +Q+ R QKR + ++R+L+
Sbjct: 7 SDRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLN 51
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/99 (19%), Positives = 38/99 (38%)
Frame = +2
Query: 128 EAEPNTSKKDSQNENSDHDTREKNPNDPGSECSWSLTSYSGVSGLDMARVRADVPKPIGK 307
E + S+ D + + D + E + ++ E S S + D + + + K
Sbjct: 605 EGQEEVSQDDEEGDFEDLEDEENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARK 664
Query: 308 KEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHR 424
KE + + R PEK + K R+ +++R
Sbjct: 665 KEELRLRFEEEDRGDPEKKDVDWYTEEKEKIARQLVINR 703
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 326 DRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRP 442
+R SRR ++ + +R R E R+ V RRP
Sbjct: 43 ERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRP 81
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 272 RVRADVPKPIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLV 418
R A VPK + KKE KT ++ + + K V K+ E ++ V
Sbjct: 199 RENAKVPKDVSKKEAKT----TKSKEKATKKTSSSVPKQSTGENTKKAV 243
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 376 FAVTMLLRP*SSPALPIYCLHFFFS 302
F + + + P S +P +C F+FS
Sbjct: 91 FHIAIFIHPYDSNVVPFFCFFFYFS 115
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 113 DESNKEAEPNTSKKDSQNENSDH 181
DE+N++A+ N S + + E S H
Sbjct: 367 DEANEDAQSNVSDESPKGEGSSH 389
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.0 bits (52), Expect = 8.6
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 7/124 (5%)
Frame = +2
Query: 116 ESNKEAEPNTSKKDSQNENSDHDTREKNPNDPGSECSWSLTSYSGVSGLD---MARVRAD 286
E NKE N + NEN DT+ + D E + +G S D
Sbjct: 253 EKNKETILNALNNSTLNENGHQDTQNEVLRDIVLEHPTAKAQDTGESNKDNNTSTSKHKK 312
Query: 287 VPKPIGK-KEMKTVDRKSRRR---SRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTR 454
PK + K K+ K +KS + + EK G + +ETR + K+
Sbjct: 313 RPKRLSKFKQAKLETKKSGNKDHATSSEKLSLGNESIHSINETRSSSIEEPDNADNKIVE 372
Query: 455 KRDL 466
+ +
Sbjct: 373 EEPM 376
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 80 ISYILKRMGMGDESNKEAEPNTSKKDSQNENS 175
+ + L R G+ ++SN+E P KK ++ ENS
Sbjct: 93 LMFPLLRAGLTNDSNRETFPLCIKKYNKIENS 124
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 374 KVNKRKRSETRRQLVHRVQKRRPKVT 451
K+++RKR RQ V R KRR +T
Sbjct: 320 KLSQRKRDWINRQSVPRASKRRRPLT 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,866
Number of Sequences: 5004
Number of extensions: 51456
Number of successful extensions: 212
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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