Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22j16
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 125 7e-30
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 29 0.84
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 27 2.6
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 3.4
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 4.5
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 26 4.5
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 26 4.5
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 5.9
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 5.9
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.9
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 7.8
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 25 7.8
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 7.8
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 25 7.8
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 125 bits (301), Expect = 7e-30
Identities = 89/236 (37%), Positives = 122/236 (51%), Gaps = 13/236 (5%)
Frame = +2
Query: 29 PKSGETLHXXXXXXXXXXXX--ANQCVAAAKLGGNA----YMICRVGDDQWGKKYKDHLK 190
P GET+H ANQ VA A+L A M+ VGDD +G + LK
Sbjct: 22 PSGGETIHGEPDGFSTGNGGKGANQAVAVARLSNPADTKVSMLGCVGDDAFGVEMLSGLK 81
Query: 191 NEGVNVSYVHITKNETTGVAQIVVAENGENQIVIVPGANKCLSVQDVEESIELIKNADVL 370
+GVNV V +N++TGVA I+V E GEN+I++ GAN + V+ + I ++L
Sbjct: 82 KDGVNVDNVKKIENKSTGVAMIIVEETGENRILLSEGANGNVDTAFVKAMEQRISTCNLL 141
Query: 371 IGQLETPFETTYTAFKL--NNGIK-LLNAAPALTDIRKILPFCTILCVNELEASVLTN-- 535
I QLE P E A ++ +G+ L+N APA+ ++ +C L NE EA++L N
Sbjct: 142 IMQLEIPLEAVEIALQIAHKHGVDVLMNPAPAIPLSHDMISYCAYLVPNEHEAAILLNQA 201
Query: 536 -VDVTISNASMAAKKLLETGC-ETVIITLGSEGAVYMSKNEECPKHVLCEAVNPVD 697
T+ N A KLL G + VIITLGS+GA Y S N E C+ V VD
Sbjct: 202 DSPATLENVDAYASKLLSFGVRKAVIITLGSQGAYYKSANGESALVSACK-VKAVD 256
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 28.7 bits (61), Expect = 0.84
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 633 TAPSDPSVIIT-VSQPVSSNFFAAIEAFEMVTSTLVRTDASNSLTQSIVQNGKIFRISVN 457
T+ S S IT SQ V ++ + + VTST + +S+S + SI + R+S+
Sbjct: 554 TSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSSSSSSSSSSIESSANAVRVSIL 613
Query: 456 AGAAFNSFI 430
AAF + +
Sbjct: 614 GVAAFIAIV 622
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 260 VAENGENQIVIVPGANKCLSVQDVEESIEL--IKNADVLIGQLETPFETTYTAFKLNNGI 433
+AE +N + + G NK L+ D+++ EL ++ A +L Q + + K +
Sbjct: 106 IAEIIQNALKLHSGVNKALANHDLQQLEELCTLRTAQILKQQALNQPKCIWKLEKHISKP 165
Query: 434 KLLNAAPALTDIR 472
KLLN + A D++
Sbjct: 166 KLLNLSRAQADLK 178
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +2
Query: 467 IRKILPFCTILCVNELEASVL----TNVDVTI---SNASMAAKKLLETGCETVII 610
+++++P +L N EA ++ TN V I + KKL++ GC+ V+I
Sbjct: 125 VKELIPRAEVLIPNIAEALIILKHMTNEFVEIHHLEDVKAVGKKLIKAGCKNVVI 179
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 425 NGIKLLNAAPALTDIRKILPFCTILCVNELEASVLT 532
N K + A L D+ LP C +L NEL LT
Sbjct: 43 NTPKFMKALAYLDDVEDELPNCQMLAPNELRLGDLT 78
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 314 LSVQDVE-ESIELIKNADVLIGQLETPFETTYTAFKLNNGIKLLNAAPA 457
L++Q+ + + + NA ++I + +TYTA + +G+ L APA
Sbjct: 343 LAIQEANIKGLPSVFNAVIIISVISVTNSSTYTAGRTLHGMANLKQAPA 391
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/50 (20%), Positives = 27/50 (54%)
Frame = +2
Query: 206 VSYVHITKNETTGVAQIVVAENGENQIVIVPGANKCLSVQDVEESIELIK 355
V+Y++ T V +++ + + ++ VPG+ +++ V S+ L++
Sbjct: 196 VNYLYELDKTTQDVIMLILDNSNDTSLITVPGSKLQIALPSVTVSLPLLQ 245
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 146 VGDDQWGKKYKDHLKNEGVNVSYVH-ITKNETTGV--AQIVVAENGENQIVIVPGANK 310
V +++ KY+D +K EG SY H + + GV + +E+ +N I P N+
Sbjct: 41 VSEEESQDKYEDEMKTEGEFPSYKHTLVQVVVPGVDHRTKLHSESSKNDSEITPDINR 98
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 125 NAYMICRVGDDQWGKKYKDHLKNEGVNVS 211
N Y C D WG K DH N + V+
Sbjct: 708 NVYAFCNTHDVSWGTK-GDHFTNNDLGVA 735
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 218 HITKNETTGVAQIVVAENGENQIVIVPGANKCLSVQDVEESIELIKNADVLIGQLE 385
H+ K++ G + +++ + + + N C +++++IE+IK + L QLE
Sbjct: 490 HLLKDDLDGSVRALLSLSQWPRALSRDWINACRRRMELQQAIEIIKASATLSSQLE 545
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 538 GCHHFECFNGCKKIAGNWLRNSYNNTRI*RSC 633
GC +EC +G +G+ + +++N + R C
Sbjct: 430 GCIMYECLSGFPPFSGSNVNETWSNLKNWRKC 461
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 7.8
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = +2
Query: 326 DVEESIELIKNADV-LIGQL--ETPFETTYTAFKLNNGIKLLNAAPALTDIRKILPFCTI 496
DV++ I + AD L+ ++ + P E + N+G+ + +A + ++KI+P+
Sbjct: 2 DVDDLIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNK 61
Query: 497 LCVNELEASVLTNVD-VTISNASMAAKKLLETGCETVIITLGSEGAVY 637
+N S T + ++ + K LLE G + I + + +Y
Sbjct: 62 EVINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIY 109
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +2
Query: 467 IRKILPFCTILCVNELEASVLTNVDVTISNA 559
++K L +C I NE++++ L +D++ S +
Sbjct: 176 LQKALKYCDIFSPNEVDSANLLGIDISESKS 206
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 492 VQNGKIFRISVNAGAAFNSFIPLFN 418
+ N + + N + FNSFIP FN
Sbjct: 43 IVNPNYYNMGFNPYSGFNSFIPSFN 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,626
Number of Sequences: 5004
Number of extensions: 58530
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -