Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22j16
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0170 + 27178952-27179572,27181631-27181816,27182245-271822... 62 5e-10
01_06_1643 - 38878597-38878725,38878818-38878934,38879118-388794... 57 1e-08
08_01_0097 + 694992-695204,696449-697111,697188-697322 54 1e-07
02_05_0012 - 24959542-24959684,24960132-24960192,24960995-249611... 36 0.023
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 36 0.041
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 36 0.041
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 33 0.22
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346... 30 1.5
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 28 8.1
>01_06_0170 +
27178952-27179572,27181631-27181816,27182245-27182274,
27183323-27183518,27183623-27183714,27183753-27183773,
27184216-27184248
Length = 392
Score = 61.7 bits (143), Expect = 5e-10
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 18/243 (7%)
Frame = +2
Query: 23 KLPKSGETLHXXXXXXXXXXXXANQCVAAAKLG-GNAYMICRVGDDQWGKKYKDHLKNEG 199
+LP GET+ ANQ +L G Y++ RVGDD G+ + L + G
Sbjct: 73 RLPLVGETVAARAGRSLAGGKGANQAACGGRLAAGPTYLVARVGDDANGRLLEGALADAG 132
Query: 200 -VNVSYVHITKNETTGVAQIVVAENGENQIVIVPGANKCLSVQDV-EESIELIKNADVLI 373
V + V +G A +++ G+N I+IV GAN V + ++LI+ A VL+
Sbjct: 133 GVRLDRVARAPGAPSGHAVVMLMPGGQNSIIIVGGANMEGWASGVGSDDLDLIRRAGVLL 192
Query: 374 GQLETPFETTYTAFKLNNGI---KLLNAAPALTDI-RKILPFCTILCVNELEASVLTNVD 541
Q E P + G +L+A + ++L I NE E + LT +
Sbjct: 193 LQREIPDWVNVQVAQAAKGAGVPVILDAGGMDAPVPGELLSLVDIFSPNETELARLTGMP 252
Query: 542 V----TISNASMAAKKL-------LETGCETVIITLGSEGAVYMSKNEECPKHVLCEAVN 688
IS A+ A K+ G + V++ LGS+G+ + E + + A
Sbjct: 253 TETFEQISRAAGACHKMDNCNMRNCIKGVKEVLVKLGSQGSALFIEGGEPIRQPIIPATE 312
Query: 689 PVD 697
VD
Sbjct: 313 VVD 315
>01_06_1643 -
38878597-38878725,38878818-38878934,38879118-38879450,
38880366-38880758
Length = 323
Score = 57.2 bits (132), Expect = 1e-08
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 18/205 (8%)
Frame = +2
Query: 89 ANQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQIVVAE 268
AN +A A+LGG A + ++GDD++G+ L++ GV+ V T +A + +
Sbjct: 42 ANVAIAVARLGGGAAFVGKLGDDEFGRMLAAILRDNGVDDGGVVFDAGARTALAFVTLRA 101
Query: 269 NGENQIVIVPGANKCLSVQDVEESIELIKNADVL----IGQLETPFETTY-TAFKL-NNG 430
+GE + + + + + E ++ELIK A V I + P + + A ++
Sbjct: 102 DGEREFMFYRNPSADMLLTHAELNVELIKRAAVFHYGSISLIAEPCRSAHLRAMEIAKEA 161
Query: 431 IKLLNAAP------------ALTDIRKILPFCTILCVNELEASVLTNVDVTISNASMAAK 574
LL+ P A T I I I+ V+E+E LT +D + M
Sbjct: 162 GALLSYDPNLREALWPSREEARTKILSIWDQADIVKVSEVELEFLTGIDSVEDDVVM--- 218
Query: 575 KLLETGCETVIITLGSEGAVYMSKN 649
KL + +++TLG +G Y +++
Sbjct: 219 KLWRPTMKLLLVTLGDQGCKYYARD 243
>08_01_0097 + 694992-695204,696449-697111,697188-697322
Length = 336
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/93 (27%), Positives = 49/93 (52%)
Frame = +2
Query: 89 ANQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQIVVAE 268
AN A +KLGG++ + + GDD++G D LK GVN ++ T +A + +
Sbjct: 53 ANVACAISKLGGSSAFVGKFGDDEFGHMLVDILKKNGVNAEGCLFDEHARTALAFVTLKS 112
Query: 269 NGENQIVIVPGANKCLSVQDVEESIELIKNADV 367
NGE + + + + + + E +++LI+ A +
Sbjct: 113 NGEREFMFYRNPSADMLLTEAELNLDLIRRAKI 145
>02_05_0012 -
24959542-24959684,24960132-24960192,24960995-24961117,
24961196-24961262,24961510-24961580,24961650-24961747,
24962279-24962355,24963568-24963635,24963754-24963855,
24963945-24963976,24964066-24964112,24964263-24964316,
24964952-24965034
Length = 341
Score = 36.3 bits (80), Expect = 0.023
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Frame = +2
Query: 119 GGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQIVVAENGENQIVIVP 298
G +YM C +G D++G++ K + + GV Y + TG + V GE +V
Sbjct: 79 GATSYMGC-IGKDKFGEEMKKNAQAAGVTAHYYE-DEAAPTGTCAVCVV-GGERSLVANL 135
Query: 299 GANKCLSVQDVE--ESIELIKNADVLI--GQLET--PFETTYTA--FKLNNGIKLLN-AA 451
A C + ++ E+ L++ A + G T P A NN + L+N +A
Sbjct: 136 SAANCYKSEHLKKPENWALVEKAKYIYIAGFFLTVSPDSIQLVAEHAAANNKVFLMNLSA 195
Query: 452 PALTDI-----RKILPFCTILCVNELEASVLTNV 538
P + + K+LPF + NE EA + V
Sbjct: 196 PFICEFFRDAQEKVLPFVDYIFGNETEARIFAKV 229
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 35.5 bits (78), Expect = 0.041
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +2
Query: 92 NQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQIVVAEN 271
N AAA+LG +I +V +D G+ L+++GV+ S++ + + + I+V
Sbjct: 53 NALTAAARLGLRPRIISKVSNDPQGRNILKELQDDGVDTSHILVAEEGNSPFTYIIVDNQ 112
Query: 272 GENQIVI-VPGANKCLSVQDVEESI-ELIKNADVL 370
+ + I PG + + +E++ + AD++
Sbjct: 113 TKTRTCIHTPGYPPMVPEELTQENLFAALDGADIV 147
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 35.5 bits (78), Expect = 0.041
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = +2
Query: 89 ANQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQIVVA- 265
+N +A +LGG A ++ +VGDD +G++ + E V + T A++ V
Sbjct: 492 SNVAIALTRLGGRAAVLGKVGDDDFGRELVYRMNCERVQTRAIRFDDGAATATARMKVGF 551
Query: 266 ---ENGENQIVIVPGANKCL---SVQDVEESIELIKNADV 367
E+G +V K S+ E +++++K A V
Sbjct: 552 RDREDGSGGTRLVAETVKSAAEDSLSKAEINVDVLKEARV 591
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 89 ANQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQIVVAE 268
+N +A A GG + ++GDD +G+ HL GV + + + T ++ + V E
Sbjct: 254 SNVALALAASGGRVEFMGKLGDDDYGQSTLYHLNVNGVQTRAIKMDPSAFTAMSLMKVTE 313
Query: 269 NGENQIVIVPGANK 310
+ Q I P K
Sbjct: 314 DCFVQTDINPAVLK 327
>03_01_0451 +
3461229-3461561,3462043-3462290,3462425-3462716,
3463057-3463209,3463288-3463674
Length = 470
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 92 NQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQ 253
N AAA+LG + VG++ +GK D L+ EG++V V + N +G +
Sbjct: 121 NLAFAAARLGLRCSTLGHVGEEIYGKFLLDVLEEEGISV--VGMLDNSDSGACR 172
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -2
Query: 621 DPSVIITVSQPVSSNFFAAIEAFEMVTS 538
+P+V+IT +P++S F A+E + +V +
Sbjct: 257 EPAVVITFEEPLTSCFDGAVEHYHVVAA 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,541
Number of Sequences: 37544
Number of extensions: 342915
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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