Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j16
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical pr...   113   9e-26
Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z66524-9|CAA91422.3|  696|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z66524-8|CAH10782.1|  753|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z66523-11|CAA91417.3|  696|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z66523-10|CAH04723.1|  753|Caenorhabditis elegans Hypothetical p...    28   5.5  
U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    27   9.7  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    27   9.7  
AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical
           protein F07A11.5 protein.
          Length = 343

 Score =  113 bits (273), Expect = 9e-26
 Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 5/233 (2%)
 Frame = +2

Query: 14  YAPKLPKSGETLHXXXXXXXXXXXXANQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKN 193
           Y    P+ GE++             ANQ VAAA+LG N  MI  VG+D +G      L +
Sbjct: 50  YTDSFPRPGESVRGHNFKLGSGGKGANQAVAAARLGINVSMIGMVGEDMFGDSNIKDLSS 109

Query: 194 EGVNVSYVHITKNETTGVAQIVVAENGENQIVIVPGANKCLSVQDVEESIELIKNADVLI 373
            GV+ S V  TK   T  A I V + GEN IV+  GAN  +S +  + +   I  + ++I
Sbjct: 110 NGVDTSCVGRTKKTHTATATITVNKEGENNIVVTLGANLEMSPEIADANSSKIAGSKMVI 169

Query: 374 GQLETPFETTYTAFKL--NNGI-KLLNAAPALTDIRK-ILPFCTILCVNELEASVLTNV- 538
            Q E   +    AF++  ++G+   LN AP   ++ K IL    I+C NE EA  +T + 
Sbjct: 170 CQGEIDEKGNRRAFEIARSHGVTTFLNPAPGDPNMDKTILELVDIICTNENEAEFITGIA 229

Query: 539 DVTISNASMAAKKLLETGCETVIITLGSEGAVYMSKNEECPKHVLCEAVNPVD 697
              + +A  AA+ +L+ G +  IITLG +G +  SK  +  +H     V+ VD
Sbjct: 230 QNNVKDAEKAARAMLKMGPQHAIITLGGKGVLLASKGVDDVEHTAVIKVDAVD 282


>Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical
           protein C05E7.4 protein.
          Length = 278

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 253 LCYACCFILCDVNIRHINTFIFEMVFIFFTPLIIP 149
           +C A  F++C  ++R  ++F+ + VF+F  P IIP
Sbjct: 73  VCMAGIFVICSDSLR-AHSFVIDQVFVFLLPKIIP 106


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 538 GCHHFECFNGCKKIAGNWLRNSYNNTRI*RSCLYVKK 648
           G H  +  NG   I+GN L  SY  TR  ++  +VK+
Sbjct: 275 GTHDDQLCNGMNSISGNTLNTSYEETRQLKNSDHVKQ 311


>Z66524-9|CAA91422.3|  696|Caenorhabditis elegans Hypothetical
           protein T13H5.1a protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 254 IVVAENGENQIVIVPGANKCLSVQDVEESIEL 349
           IV++ NG +++ +  GAN C+   D++  +++
Sbjct: 568 IVMSHNGVSRVGVYIGANICIDQMDIDHEVDV 599


>Z66524-8|CAH10782.1|  753|Caenorhabditis elegans Hypothetical
           protein T13H5.1b protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 254 IVVAENGENQIVIVPGANKCLSVQDVEESIEL 349
           IV++ NG +++ +  GAN C+   D++  +++
Sbjct: 625 IVMSHNGVSRVGVYIGANICIDQMDIDHEVDV 656


>Z66523-11|CAA91417.3|  696|Caenorhabditis elegans Hypothetical
           protein T13H5.1a protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 254 IVVAENGENQIVIVPGANKCLSVQDVEESIEL 349
           IV++ NG +++ +  GAN C+   D++  +++
Sbjct: 568 IVMSHNGVSRVGVYIGANICIDQMDIDHEVDV 599


>Z66523-10|CAH04723.1|  753|Caenorhabditis elegans Hypothetical
           protein T13H5.1b protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 254 IVVAENGENQIVIVPGANKCLSVQDVEESIEL 349
           IV++ NG +++ +  GAN C+   D++  +++
Sbjct: 625 IVMSHNGVSRVGVYIGANICIDQMDIDHEVDV 656


>U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical
           protein T24C12.3 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 92  NQCVAAAKLGGNAYMICRVGDDQWGKKYKDHLKNEGVNVSYVHITKNETTGVAQIV-VAE 268
           N   A A+LG ++  I  +GDD  G  ++ +  +  ++++ V I  N+ T     V V  
Sbjct: 374 NHADALARLGCDSVFISAIGDDNNGHFFRQN--SHKIDINRVKIISNKPTCTYLAVNVKG 431

Query: 269 NGENQIVIVPGANKCLSVQDVEESIELIKNADVLI 373
           N +  IV        ++   VE + + ++++D ++
Sbjct: 432 NVKYGIVTCEPLLSVITPSLVESNEDALESSDFIL 466


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 500 CVNELEASVLTNVDVTISNASMAAKKLLETGCETVI-ITLGSEGAVYMSKNEECP 661
           C NE  A+++TN+ +T+    M  K+   TG ++++ I+      V + ++EE P
Sbjct: 749 CDNETNATIITNIRITV---QMDPKEFQVTGGQSLMEISSALRVTVRIQRDEEGP 800


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 500 CVNELEASVLTNVDVTISNASMAAKKLLETGCETVI-ITLGSEGAVYMSKNEECP 661
           C NE  A+++TN+ +T+    M  K+   TG ++++ I+      V + ++EE P
Sbjct: 749 CDNETNATIITNIRITV---QMDPKEFQVTGGQSLMEISSALRVTVRIQRDEEGP 800


>AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical
           protein B0205.6 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 182 HLKNEGVNVSYVHITKNETTGVAQIVVAENGENQIVIVPGANKCLSV-QDVEESIELIKN 358
           +L+NEG  V+Y+ + K     + Q+  +   E  +V +   N  + V Q +++  EL ++
Sbjct: 120 YLENEGFKVTYLPVDKGGMVDMEQLTQSITAETCLVSIMFVNNEIGVMQPIKQIGELCRS 179

Query: 359 ADV 367
             V
Sbjct: 180 KGV 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,202
Number of Sequences: 27780
Number of extensions: 333749
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)