Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j14
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   0.89 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.7  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   6.3  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   8.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   8.3  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   8.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   8.3  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    25   8.3  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.3  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 447 LLVALLGVSMSACAFASQPV 506
           L VALLG+S+  C FAS P+
Sbjct: 132 LTVALLGMSLYVCGFASGPI 151


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 676 DCFDITAISKSKDVTAVRNALDFPFPITSRIVGFV 572
           D  D TAI KS    +V N LD P P+T+ I  FV
Sbjct: 448 DHTDFTAIVKSY-FESVDNPLDIPKPLTNTINKFV 481


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 596 YWKWKIQCISDGSDILAFTYRCDVEAIVVAS 688
           YWK KI C S GS+I    +  D   ++  +
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGA 147


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 192 FIISYYYTCFYGTVGLFISVHHLKTHLGEQPMASTENIYNFMIIHDLKIIATSMGFI 362
           F++  +++ F+G+VGL I    L     ++       IY   I     I   + GFI
Sbjct: 131 FVVFRFFSGFFGSVGLGIGAGSLSDMFSKRDRGKYIGIYFLGICLGPAIAPIASGFI 187


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 291 STENIYNFMIIHDLKIIATSMGFIQYVCLLIGCLTINAVGENS 419
           +T  +  F  +HD   IAT +    +  L++G L  N   E+S
Sbjct: 416 ATAKVTFFQYLHDYSYIATFVFTYVFQALMLGSLFYNLRNESS 458


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 312 FMIIHDLKIIATSMGF-IQYVCLLIGCLTINAVGENSHAAQIKMRALLVALLG 467
           + ++ D+ ++A S    ++ +CLL GC      G  +H+A+++  +  VA++G
Sbjct: 151 YTVVADISLVAISHSAPLRSICLL-GCGVTTGFGAVTHSAKVESGS-TVAVVG 201


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 617 CISDGSDILAFTYRCDVEAIVVASRCSMACSTGSI 721
           C SD   +L  +Y  + E  +  S C + C+  S+
Sbjct: 118 CFSDYKKVLGSSYASEEERQLALSECHLRCAERSL 152


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 175 VVNIIHL*LVTIILASTGLSAYLLVFI 255
           +VN+ H+ LV +  A T +   LL+FI
Sbjct: 43  IVNLFHVTLVVLFSALTIIEGVLLIFI 69


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +2

Query: 311 FHDHSRFEDHSDLNGLHTICLSAY----RMFNNKRGRREFACRSNQDA 442
           FH ++    H+D  G H++ LS+     ++FNN++    ++  SN ++
Sbjct: 404 FHVNNSSSGHNDNEGNHSLILSSKTKSPQLFNNEKKDESYSGFSNTNS 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,268
Number of Sequences: 5004
Number of extensions: 57612
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)