Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22j14
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411... 32 0.53
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 30 2.2
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583... 29 2.8
02_05_0634 + 30513920-30514136,30514674-30514717,30515547-305155... 29 2.8
05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117... 29 3.8
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702... 29 5.0
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587... 28 8.7
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148... 28 8.7
>11_01_0524 -
4115125-4115491,4116096-4116180,4116796-4116938,
4117449-4117654,4118650-4118748,4118958-4118993,
4119222-4119276,4119505-4119690,4120572-4120759
Length = 454
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 323 SRFEDHSDLNGLHTICLSAYRMFNNKRGRREFACRSNQDACSSGS 457
SR +DH DL T+C S R+ + R+ + N A SSGS
Sbjct: 45 SRLDDHFDLARCSTVCNSWNRVIDTAHLMRDLYYKRNPQARSSGS 89
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 525 DDVTQKLSNVSFARRITKPTIRLVIGNGKSSAFLTAVTSLLLLIAVMSKQSWW 683
DDV +K++ + F+R + T+R + NG++ + L+ V Q W
Sbjct: 525 DDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGW 577
>03_02_0137 +
5832608-5833590,5833680-5833731,5833827-5833904,
5835228-5835347,5835618-5835716,5835821-5835975,
5836117-5836257,5836395-5836503
Length = 578
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 704 KPSSTATPPRLLRHHSDK*KQGCHCRQKC--TGFSISN 597
+ + AT P+ + H KQ C CRQ+C TG IS+
Sbjct: 521 RSAKPATVPKEPKFHPRPEKQSCLCRQRCMDTGMLISS 558
>02_05_0634 +
30513920-30514136,30514674-30514717,30515547-30515595,
30515663-30515835
Length = 160
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 372 CLLIGCLTINAVGENSHAAQIKMRALLVALLGVSMSACA--FASQPVELELDDDDVTQKL 545
C++ G +N V NS + AL S A A QP + +DDD++ +
Sbjct: 20 CIVYGLRRLNDVPGNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEEDDDISTQT 79
Query: 546 SNVSFARRITKPTIRLVI 599
+ F R+T + +L +
Sbjct: 80 RKIDFCVRVTDDSAQLPV 97
>05_06_0235 -
26609049-26609468,26610068-26610343,26611579-26611746,
26611850-26611945
Length = 319
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +3
Query: 45 VFASAHNVIELWRGG*KDQLEMKLPFNIVLTPI-----LKPYLGNI 167
V +S++ + ELW G DQ + P IV TP+ L PY+G++
Sbjct: 97 VVSSSNEMQELWPLGEVDQKGTRFPCCIVWTPLPVVSWLAPYIGHV 142
>01_01_0891 +
7023383-7023700,7024627-7024705,7024888-7024951,
7025324-7025401,7025513-7025708,7025895-7025963,
7026115-7026254,7026425-7026547,7027390-7027582,
7028872-7029034,7029433-7029476,7029683-7029724
Length = 502
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 567 RITKPTIRLVIGNGKSSAFLTAVTSLLLLIAVMSKQSWWRRGARW 701
R P +R+V G+GK+ +LT LL L+ +W RRG RW
Sbjct: 378 RTLVPRMRVVKGSGKAINYLTPPRILLALVT-----AWVRRG-RW 416
>07_03_1526 + 27456426-27456700,27457936-27458023,27458129-27458725,
27458731-27460056,27460283-27460729
Length = 910
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 309 NFMIIHDLKIIATSMGFIQYVCLLIGC-LTINAVGENSHAAQIKMRALLVALLGVSMSAC 485
N ++IHD K I + ++ +CL LT + + E SH Q + + A G +
Sbjct: 720 NMILIHDDKYIYVAASLLRNMCLHAQYELTESDLKELSHTLQEVLERTMDA-EGAELEIL 778
Query: 486 AFASQPVELELDDDDVTQKLSNVSFARRITKPTIRLVIGNGKSSAFLTAVTSLLL 650
S + +L ++ +Q+L + RR K + + N K + + ++L
Sbjct: 779 IGLSSQI-CKLIPEEFSQELEHGQMKRRFIKRLVDALNANMKPNPHCPGIRRVIL 832
>01_01_0172 +
1485170-1485176,1485480-1485511,1485622-1485870,
1486350-1487813,1487906-1487959
Length = 601
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 414 NSHAAQIKMRALLVALLGVSMSACAFASQPVELELDDDDVTQKLSNVSF 560
+ HA + LL LLG + P++L DDDD+ +++ SF
Sbjct: 215 HDHALGLTRANLLAGLLGAYVIEKPEVDTPMDLPCDDDDLHLVIADRSF 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,429,553
Number of Sequences: 37544
Number of extensions: 357137
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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