Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22j14
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82093-5|CAB05016.3| 192|Caenorhabditis elegans Hypothetical pr... 31 0.84
U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell m... 31 0.84
U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell m... 31 0.84
AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance prot... 31 0.84
AL132862-34|CAB60536.2| 395|Caenorhabditis elegans Hypothetical... 31 1.1
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z92813-6|CAB07289.1| 627|Caenorhabditis elegans Hypothetical pr... 28 5.9
U21310-5|AAY86191.1| 148|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z82093-5|CAB05016.3| 192|Caenorhabditis elegans Hypothetical
protein ZK39.6 protein.
Length = 192
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 368 CLSAYRMFNNKRGRREFACRSNQDACSSGSPAGSFYVG 481
C+SA + + +G E A SN S G+ +GSF++G
Sbjct: 54 CISAGAILSGVQGHNEAAAFSNLGLTSLGNQSGSFWIG 91
>U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell
migration protein13, isoform b protein.
Length = 356
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 312 FMIIHDLKIIATSMGFIQYVCLLIGCL--TINAVGENSH 422
F+++ II + GFI +VC L CL TI G +SH
Sbjct: 233 FVLLFSATIILSLCGFIMFVCCLCKCLKSTIPIKGASSH 271
>U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell
migration protein13, isoform a protein.
Length = 362
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 312 FMIIHDLKIIATSMGFIQYVCLLIGCL--TINAVGENSH 422
F+++ II + GFI +VC L CL TI G +SH
Sbjct: 239 FVLLFSATIILSLCGFIMFVCCLCKCLKSTIPIKGASSH 277
>AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance protein
MIG-13 protein.
Length = 362
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 312 FMIIHDLKIIATSMGFIQYVCLLIGCL--TINAVGENSH 422
F+++ II + GFI +VC L CL TI G +SH
Sbjct: 239 FVLLFSATIILSLCGFIMFVCCLCKCLKSTIPIKGASSH 277
>AL132862-34|CAB60536.2| 395|Caenorhabditis elegans Hypothetical
protein Y73F8A.11 protein.
Length = 395
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +3
Query: 246 SVHHLKTHLGEQPMASTENIYNFMIIHDLKIIATSMGFIQYVCLLIGCLTINAVGENSHA 425
S HL L P+ + +++ + + T++GFI+ V L +G L V HA
Sbjct: 65 SAIHLNVRLIHIPLTFMLGFFVTIVVDRWRSVFTNIGFIENVALSVGTL----VAGTDHA 120
Query: 426 AQIKMRALL 452
A++ R ++
Sbjct: 121 AKVLRRTII 129
>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
protein F55C5.4 protein.
Length = 1010
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 408 GENSHAAQIKMRALLVALLGVSMSACAFASQPVELELDDDD 530
GE++ I++ + + + VS+SA F ++PVE E ++D+
Sbjct: 700 GEHNQDFLIQLTSTFLNCVNVSLSAYDFKTRPVEFEDEEDN 740
>Z92813-6|CAB07289.1| 627|Caenorhabditis elegans Hypothetical
protein T28A8.6 protein.
Length = 627
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 396 INAVGENSHAAQIK--MRALLVALLGVSMSACAFASQPVELELDDDDVTQKL 545
I + G N+ ++K M LLG+ S Q V +LD+ DVT+K+
Sbjct: 557 IKSTGSNNSTMKVKDFMFKFKFFLLGLDCSELLELQQKVHEKLDEQDVTKKI 608
>U21310-5|AAY86191.1| 148|Caenorhabditis elegans Hypothetical
protein F40H6.6 protein.
Length = 148
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -3
Query: 698 SSTATPPRLLRHHSDK*KQGCHCRQKCTGFSISNNKPDRGLRNSSSETDVTQFLRDVIVV 519
+ T P L HH+ GC+ GF+ P RGL T+ ++ +V+
Sbjct: 53 AGTVAPKAPLIHHNHHTGDGCNSN---FGFNDHRLLPPRGLETCERTTEKRTYIDQHVVI 109
Query: 518 QL*LDW 501
+L D+
Sbjct: 110 RLIFDF 115
>AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical
protein C24G6.6 protein.
Length = 527
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 375 LLIGC-LTINAVGENSHAAQIKMRALLVALLGVSMSACAFASQPVELELDDDDVTQKLSN 551
++IGC +T+ E ++ IK +A++G +S + A + +EL +DD D+ + L
Sbjct: 11 VIIGCGITVQKESEKGDSS-IKPS---IAIVGAGISGLSTARRLIELGIDDFDIYEGLDR 66
Query: 552 V 554
+
Sbjct: 67 I 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,026
Number of Sequences: 27780
Number of extensions: 322616
Number of successful extensions: 954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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