Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j14
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.73 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 249 VHHLKTHLGEQPMASTENIYNFMIIHDLKI-IATSMGFIQYVCLLIG 386
           V H++TH GE+P         F     LK+   T  G   Y C + G
Sbjct: 192 VIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICG 238


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 276  EQPMASTENIYNFMIIHDLKIIATSMG 356
            +QP+     + N   +H LK+I T  G
Sbjct: 1238 QQPIILPSQLLNIKTLHGLKVIPTPAG 1264


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +3

Query: 240 FISVHHLKTHL----GEQPMASTENIYNFMIIHDL-KIIATSMGFIQYVCLL 380
           F   HHLKTH+    GE+P   +     F+ + +L + +    G   Y C L
Sbjct: 19  FTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACEL 70


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 389 TSYKQTNILYEAH*GRYDLQIVND 318
           T +  T I+YE+  GR++ +++N+
Sbjct: 38  TYFHHTYIIYESLCGRHEKRLLNE 61


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 389 TSYKQTNILYEAH*GRYDLQIVND 318
           T +  T I+YE+  GR++ +++N+
Sbjct: 38  TYFHHTYIIYESLCGRHEKRLLNE 61


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 255 HLKTHLGEQPMA 290
           H++TH GE+P +
Sbjct: 61  HIRTHTGEKPFS 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,187
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)