Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j12
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    29   0.53 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    29   0.93 
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    28   1.2  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.2  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    28   1.6  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   5.0  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   5.0  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 267 GKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 422
           G   I K  + +   P  YAP  C    +A +  C T  LS +P D  K  R
Sbjct: 302 GLMAITKERFNKRVSPSVYAPTNCGNMYTASIFSCLTALLSRVPADELKGKR 353


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 603 YVPKPSILRESFKPAPKFHCVDQPFENRTINKLSYLPPEKIDMP 734
           Y P   +   +F P P  H  D  +  + +N+ ++LP E    P
Sbjct: 142 YYPNMYVSANTFIPMPYAHYTDNMYHAKPVNRPNFLPREGTPPP 185


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 568 VPCRTSPHNDTTTCPSRVYYERALSQHRNFTASTNHLKI 684
           +P R   H+D+T C +R+  ++AL   R +  ST+  ++
Sbjct: 355 IPMRVC-HSDSTLCDARIAAKQALKGKRQYDTSTSKAEL 392


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 258 CCCGKPPIVK--PCYKQPKIPESYAPRRCYIKPSAPVEGCTTYK 383
           CC   PP +   P +  P+I    +P  CY K   P  G T+Y+
Sbjct: 11  CCWVSPPSLTRLPAFPSPRI---LSPCYCYNKRIRPFRGLTSYR 51


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +3

Query: 393 LPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCH--HDMWGQ 566
           LP D   +   + ++  PNI+PS E  +   +  +     P   T +I   H     W  
Sbjct: 41  LPTDPKASSLHKPQEQQPNIIPSKEEDKKPVINSMKLPSIPAPGTDNINESHIPRGYWKH 100

Query: 567 GPMQNITTQRHDYVP 611
             +  I  + HD  P
Sbjct: 101 PAVDKIAKRLHDQAP 115


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = +3

Query: 549 HDMWGQGPMQNITTQRHDYVPKPSI----LRESFKPAPKF 656
           HD+W       +  ++ DY P P +      ES+ P  ++
Sbjct: 263 HDLWADDDQATVNQRKLDYAPAPKLPPPSHEESYNPPEEY 302


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -3

Query: 280 MGGFPQQQDRHGQFGLMSPSMGFPSRRPDLIPAAGHGRHS 161
           MGG     D  G FG  +   G P    ++    G G H+
Sbjct: 146 MGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAGPHA 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,823
Number of Sequences: 5004
Number of extensions: 81142
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)