Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j10
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.1  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   3.4  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   4.5  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   6.0  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 84  CKAHCRDHHNPYKRP 40
           CK HC  HH+ + RP
Sbjct: 169 CKEHCSCHHDKFPRP 183


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 89  QYVKLIVVTTTIHIKDHAKREC 24
           +Y++ IVVT T  IK  A  EC
Sbjct: 355 EYIEQIVVTNTYPIKPQAVLEC 376


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 140 LQSMMDMLRGASGSSSLPTRSESRR*SLFVY 232
           LQS +  ++  + SSS+  RS SR  S+ +Y
Sbjct: 547 LQSTLQAMKSRARSSSVSRRSRSRSLSVDIY 577


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 40  WSFIWIVVVTTMSFTYCFFTDDVARVQIKVY 132
           W++I+  V++ M    C ++  VA V   +Y
Sbjct: 64  WAYIFSWVLSNMDAVACIYSTSVAAVGASMY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,057
Number of Sequences: 5004
Number of extensions: 27816
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)