Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j10
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371     28   1.8  
01_06_1230 + 35575840-35576020,35576122-35576170,35576365-355764...    28   2.4  
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    27   3.1  
01_05_0703 - 24404580-24406373                                         27   5.5  
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    26   7.2  
06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890     26   9.6  
01_05_0625 + 23777459-23777506,23778394-23778482,23780705-23781752     26   9.6  

>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
          Length = 437

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 162 SISIMLCRSTVNFDLYASHVICEKTICKAHCRDH 61
           +I  ML     ++D     + CEK +  AHC+DH
Sbjct: 112 AIKDMLALPRFSWDGMRKMIQCEKELYDAHCKDH 145


>01_06_1230 +
           35575840-35576020,35576122-35576170,35576365-35576441,
           35576883-35577145,35577241-35577387,35578569-35578766
          Length = 304

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 QAAFRRGVKVEDNRYLFTSSKIDGARLNFIRK 275
           Q  F RG +  DN +L T+   DGA+L  + K
Sbjct: 120 QRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEK 151


>03_05_0890 -
           28547462-28547545,28548451-28548528,28548641-28548814,
           28548902-28548958,28549065-28549116,28549907-28549995,
           28550259-28550344,28550427-28550637,28551790-28551882,
           28551958-28552098,28552175-28552267,28553879-28554113,
           28554263-28554435,28555234-28556571,28556668-28556853,
           28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 139 PTKHDGYAPWGFWVKQPSDEE*KSKIIVIC 228
           P KH     WG W  QP+  E  S +  IC
Sbjct: 607 PPKHQHKTSWGHWSDQPNISEEGSIMCRIC 636


>01_05_0703 - 24404580-24406373
          Length = 597

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   GVSRHESRHSRFAWSFIWIVVVTTMSFTYCF 93
           G++R   R + F+   +W+V++T  SF  CF
Sbjct: 442 GLAREPGRFAYFSL-VVWLVMLTANSFVACF 471


>03_02_0924 + 12429764-12430120,12430562-12430637,12430803-12430849,
            12431850-12431962,12432056-12432129,12432258-12432353,
            12432440-12432559,12432660-12432893,12433486-12433634,
            12434145-12434301,12434387-12434542,12435359-12435735,
            12435871-12436020,12437071-12437253,12437440-12437643,
            12437869-12437975,12438253-12438406,12438796-12438917,
            12439541-12439787
          Length = 1040

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 204  KVEDNRYLFTSSKIDGARLNFIRKTKDVL 290
            ++ D RY+F  SK++   L  +RK +DV+
Sbjct: 954  QIVDKRYMFDMSKLEAEELRTVRK-EDVI 981


>06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890
          Length = 114

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 97  TDDVARVQIKVYRGPTKHDGYAPWGFW 177
           T  +A V++++ RG     G  PWGF+
Sbjct: 17  TGRMAAVEVQLPRGNDPRGGSYPWGFY 43


>01_05_0625 + 23777459-23777506,23778394-23778482,23780705-23781752
          Length = 394

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 73  MSFTYCFFTDDVARVQIKVYRGPTKHDGYAPW 168
           MSF   +   D  RVQ+ V+   T+   + PW
Sbjct: 170 MSFQLVWLCHDEFRVQVSVFSNDTRDWCFLPW 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,045,649
Number of Sequences: 37544
Number of extensions: 171302
Number of successful extensions: 344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)