Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j07
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    27   6.1  
AL117204-2|CAB76734.1|  272|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 204 VSRDRNLFLMKFIQFRRSAQSRYVGVPDA 290
           ++ DRN  + KF++ R++   RY+G  +A
Sbjct: 570 INNDRNDVVYKFVEHRKNKIRRYIGEVNA 598


>AL117204-2|CAB76734.1|  272|Caenorhabditis elegans Hypothetical
           protein Y116A8C.3 protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 139 PLRCLTMVLIIVVSTTFLINFF 74
           P RCL  +L +  STTF I+F+
Sbjct: 235 PNRCLDFMLRVFASTTFDIHFY 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,390,640
Number of Sequences: 27780
Number of extensions: 157148
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)