Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j06
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    27   3.3  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   4.3  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   4.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   5.7  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    26   5.7  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   10.0 
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   10.0 
SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual          25   10.0 
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   10.0 

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 519 IPLPHVAGHRVRVVLDQCIRNQTDTSSRT 605
           IPLP+V+ + +R VL+ C  ++ D  S T
Sbjct: 41  IPLPNVSSNVLRKVLEWCEHHKNDLYSGT 69


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 352 NVTVDHVDILEPDVNYYDANFYNAFFV 432
           N  +  +DIL   V+ Y  +FY AFFV
Sbjct: 361 NQIIMELDILHKAVSPYIVDFYGAFFV 387


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 292 HPPQTTVAPSVAPPLVPGPSTSA 224
           HPP   V  S++P + P P T A
Sbjct: 743 HPPPPPVRSSISPSMPPAPLTHA 765


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 375 IDVVHCDIAQYWHFLAGHGQP*ADL 301
           I ++HC I+Q W  L  HG   A L
Sbjct: 80  IILIHCTISQSWDCLVEHGATWAKL 104


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 539 SDVR*RYTMMRCFAYSTKMQSDDKHPEQQTRNLKKV 432
           S+VR   +M    +   + QS   H EQ T NLKKV
Sbjct: 126 SNVRGMESMSSLVSRLPQRQSSASHSEQPTINLKKV 161


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 186 TDNLNTTQASVTHCIRLLYQVEIYFNT 106
           TD+L  ++  V  CI  L+ V  Y NT
Sbjct: 437 TDHLLLSRCEVKDCIHRLFMVLYYLNT 463


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 480 LHFRAIREAPHHRIPLPHVAGHRVRVVLDQCIRNQTDTSSR 602
           LHF+   + P  RIP    +G +      + I  +TD  S+
Sbjct: 110 LHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISK 150


>SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 167 HKHLLHTAYVYYTKLRYILIHKIELIKMCFIRLVL 63
           H  +   AY++Y+ +  IL++++E+    +IR  L
Sbjct: 3   HTTVYGLAYLFYSGINCILLYQLEIESKFYIRYQL 37


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 488 KMQSDDKHPEQQTRNLKKVTKN 423
           K   DDK     T+N KK++KN
Sbjct: 193 KDDKDDKEDSNDTKNDKKISKN 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,625
Number of Sequences: 5004
Number of extensions: 51476
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)