Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22j03
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   5.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.6  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   8.7  

>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 5   APPSDAKLFCGGLSSFCQTLSRIFRPNAWECVENLCQKLSRPTS 136
           +PP+    F GGLS+  Q   + F  +  + +  +  K+S PT+
Sbjct: 129 SPPTPPGPFPGGLSTDIQEKLKAFHASRSKSMPEVVNKISSPTT 172


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
 Frame = +2

Query: 329  IGDLARLEKIGREMKNGTCDLPVKKMNIIIDIETDPDPRLRLNTDEAYTISVNSNFDFIT 508
            +GDL    K+G  +K     LP+  +N+ +   T    RL LN      I+ N N+D + 
Sbjct: 968  LGDLIHNRKMGPTVKKFISKLPLLNINVDLLPLTKNVLRLVLN------ITPNFNWD-MR 1020

Query: 509  IHLSSSS---FCGARHGLETL-NQMILLDQ---LTGYLITLSHIIVKDAPSHKY 649
             H +S     F    +GLE L ++ +LL++    T +L++ +  +    PS  Y
Sbjct: 1021 YHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHLLSFTIPVSNPLPSQLY 1074


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 123 AGQHLNVFMFRTVDAFCSVWDH 188
           + +  N+F+  ++D   +VWDH
Sbjct: 360 SSEESNIFLTTSIDGVMNVWDH 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,124
Number of Sequences: 5004
Number of extensions: 66266
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)