Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22j03
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 60 1e-09
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 54 2e-07
03_02_0187 - 6248226-6249226,6249296-6250148 53 2e-07
07_03_1000 - 23220878-23221821,23222164-23223001 51 1e-06
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 38 0.008
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850... 29 5.2
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984... 28 9.1
01_01_0111 + 806850-806938,807213-807291,807533-807855,808291-80... 28 9.1
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +2
Query: 404 MNIIIDIETDPDPRLRLNTDEAYTISVNSNFDFITIHLSSSSFCGARHGLETLNQMILLD 583
+N+++ + P L DE+Y +SV + I + + + GA H LET +Q+ D
Sbjct: 95 VNVVVHL---PGDELNFGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFD 151
Query: 584 QLTGYLITLSHI--IVKDAPSHKYRGLMIDTGRNYIPMP 694
T LI L + D P YRGL+IDT R+Y+P+P
Sbjct: 152 -FTSRLIELQSAPWSITDMPRFPYRGLLIDTSRHYLPVP 189
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 53.6 bits (123), Expect = 2e-07
Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 7/179 (3%)
Frame = +2
Query: 191 LWPYPIGYTLFSKNLVAMSILKLEYKFQSLPSENVHRHLAEAFKLFIGDLARLEKIGREM 370
LWP P +T S+ L+ L L+ + + V AEAF+ + +
Sbjct: 39 LWPLPRNFTSGSRTLLVDPDLALDGQGPGGAAAAV----AEAFERYRSLV--FSPWAHAA 92
Query: 371 KNGTCDLPVKKMNIIIDIETDPDPRLRLNTDEAYTI------SVNSNFDFITIHLSSSSF 532
+N + V K+ +++ D +L L DE+YTI VNS TI +++
Sbjct: 93 RNASGGYDVGKLTVVV---ASADEKLELGVDESYTIYVAAAGGVNSIVGGATIE--ANTI 147
Query: 533 CGARHGLETLNQMILLDQLTGYL-ITLSHIIVKDAPSHKYRGLMIDTGRNYIPMPDLMK 706
GA GLET +Q+ + + T + + + ++D P +RGL++DT R+++P+ D++K
Sbjct: 148 YGAIRGLETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPV-DVIK 205
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Frame = +2
Query: 389 LPVKKMNIIIDIETDPDPRLRLNTDEAYTISVNSNFDFITIHLSSSSFCGARHGLETLNQ 568
+PV+ + + + +DPD L DE+YT+SV D + +S+++ GA GLET +Q
Sbjct: 110 VPVRTLTLSV---SDPDVPLGPAVDESYTLSVLP--DSGSADISAATPWGAIRGLETFSQ 164
Query: 569 MILLD---QLTGYLITLSHIIVKDAPSHKYRGLMIDTGRNYIPMPDLM 703
+ G I S I + D P +RG+++DT RN+ P+ D++
Sbjct: 165 LAWAGGGAASGGQPIVPSGIEISDRPHFTHRGILLDTARNFYPVRDIL 212
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/87 (29%), Positives = 49/87 (56%)
Frame = +2
Query: 446 LRLNTDEAYTISVNSNFDFITIHLSSSSFCGARHGLETLNQMILLDQLTGYLITLSHIIV 625
L+ DE+Y + + T+ ++++ GA GLET +Q+ ++ + + V
Sbjct: 124 LQHGVDESYALEILPAGAAATV--TAATAWGAMRGLETFSQLAWWCGRERAVLVAAGVRV 181
Query: 626 KDAPSHKYRGLMIDTGRNYIPMPDLMK 706
+D P + +RGLM+DTGR Y P+ D+++
Sbjct: 182 EDRPLYPHRGLMLDTGRTYFPVADILR 208
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 37.9 bits (84), Expect = 0.008
Identities = 36/172 (20%), Positives = 76/172 (44%)
Frame = +2
Query: 191 LWPYPIGYTLFSKNLVAMSILKLEYKFQSLPSENVHRHLAEAFKLFIGDLARLEKIGREM 370
LWP P + ++ L + + + + P L +AF+ + DL +L +
Sbjct: 30 LWPMPTSVSHGTQRLYVSKDITMSMEGSTYPDGK--GILKDAFQRVV-DLMKLNHVVDGA 86
Query: 371 KNGTCDLPVKKMNIIIDIETDPDPRLRLNTDEAYTISVNSNFDFITIHLSSSSFCGARHG 550
+ L +N+++ P+ L+ DE+Y +SV + + + + + + GA H
Sbjct: 87 NPSSFVLT--GVNVVVH---SPEDELKFGVDESYNLSVPTAGYPLRVQIEAQTVFGALHA 141
Query: 551 LETLNQMILLDQLTGYLITLSHIIVKDAPSHKYRGLMIDTGRNYIPMPDLMK 706
L+ ++++ G +T + +D + R L DT R+Y+P+ + K
Sbjct: 142 LQNSSRLL------GEFLTHQDFLTEDFLLDQMR-LHADTSRHYLPVTVIKK 186
>07_01_1004 +
8500584-8501881,8502194-8502402,8503024-8503266,
8503381-8503697,8503891-8504250
Length = 808
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 296 HRHLAEAFKLFIGDLARLEKIGREMKNGTCDLPVK--KMNIIIDI 424
H L + + +GDL LE+I + ++P K ++NI++D+
Sbjct: 468 HNKLTGSIPMLLGDLQLLEQIDLSFNHLRGEVPTKAQRLNIVVDV 512
>07_03_0739 -
21096684-21096742,21096822-21097076,21097206-21098498,
21098616-21098688
Length = 559
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 232 FGSYVDPKIGIQISIVTFRERASAF 306
F +Y DP GI + TFR A F
Sbjct: 207 FFAYADPSTGISLEYATFRPNAGVF 231
>01_01_0111 +
806850-806938,807213-807291,807533-807855,808291-808375,
808468-808488,808704-808721
Length = 204
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 506 TIHLSSSSFCGARHGLETLNQMIL----LDQLTGYLITLSHIIVKDA 634
T H S S+CG HG+ L I+ L+ G L ++ +DA
Sbjct: 87 TEHASGHSYCGPLHGVPILKDNIVKRDRLNTTAGSFALLGSVVCRDA 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,586,704
Number of Sequences: 37544
Number of extensions: 395655
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -