Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22i23
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1176 + 10112257-10113126 32 0.28
03_04_0174 - 18044516-18046327 29 2.0
03_02_0294 + 7176906-7177532 28 3.4
02_05_0207 + 26778403-26778927 28 3.4
08_02_0899 + 22401302-22401694 28 4.5
12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746 27 6.0
06_03_0395 - 20354713-20355570 27 6.0
06_02_0011 - 10569471-10572245 27 6.0
02_04_0216 + 20986231-20988021 27 6.0
01_06_1229 + 35551522-35552169 27 6.0
01_06_1217 + 35485182-35485949 27 6.0
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 27 6.0
10_08_0019 - 14167952-14171059 27 7.9
07_01_0622 - 4625246-4627759 27 7.9
01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611... 27 7.9
>06_01_1176 + 10112257-10113126
Length = 289
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -3
Query: 429 SFALHYLCAPWTTARS-----AEPSSAASDTAVPTAVVRAG 322
SFA H + P+ ARS A ++AA+D A PTAV+ AG
Sbjct: 219 SFAAHSISPPFAAARSSDGPAAAAAAAAADWAPPTAVLDAG 259
>03_04_0174 - 18044516-18046327
Length = 603
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = -3
Query: 450 NFDSIHISFALHYLCAPWTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV* 271
+FDS + +PWT + A ++ + A A SS+ + S PPTR+
Sbjct: 260 SFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLH 319
Query: 270 TISTSRVHAT 241
+ S T
Sbjct: 320 ILDLSNTFCT 329
>03_02_0294 + 7176906-7177532
Length = 208
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 264 STSRVHATGTNLTAAIHSIGQGTARARHRPLTTQT 160
+TS V A GTN TAA + R R PL+T T
Sbjct: 29 ATSAVVARGTNATAAAANATVMARRGRSSPLSTAT 63
>02_05_0207 + 26778403-26778927
Length = 174
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -3
Query: 426 FALHYLCAPWTTARSAEPSSAASDTAVPTAVV--RAGYSSTVAV 301
F+LH + A + S P++A D+++P+AVV R G S++ +
Sbjct: 9 FSLHVVLAGLPPSMSLAPAAARHDSSLPSAVVVARVGPLSSIVL 52
>08_02_0899 + 22401302-22401694
Length = 130
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 130 PQLDMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 270
P D+ V L G +G P +Y CC GPC V G C
Sbjct: 14 PVGDLQVAKLALLVAG--NGFISPSSYLRRCCDDDGPCFVDGAGERC 58
>12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746
Length = 241
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -2
Query: 442 LDSHFFCVTLFMRTMDHSKKRRALQCSLRYSRAHSCSTSRLLLHGSRAYLRTANTSLNNK 263
LD + +T+F T+ HS K + R RA + S + + G ++T+L N
Sbjct: 139 LDMAYLMITVFSSTIQHSSKDVGVPPEYRIRRAVNTSKEK-VSPGDSDIDTESSTNLQNS 197
Query: 262 HLSRARNRDQLD 227
+ R Q+D
Sbjct: 198 SVIRGAYDMQID 209
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 127 SPQLDMPVRNCCLGCQGP---MSGPCGPLAYRMDCC 225
+P L+ P CC C+GP ++ G + + CC
Sbjct: 132 APPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCC 167
>06_02_0011 - 10569471-10572245
Length = 924
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 438 IHISFALHYLCAPWTTARSAEPSSAASDT 352
+H+ A+H LC + A S P + DT
Sbjct: 556 VHVLIAIHVLCGMASPASSVSPQNRTEDT 584
>02_04_0216 + 20986231-20988021
Length = 596
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 411 LCAPWTTARSAEPSSAASDTAVPTAVVRA 325
L PW A +A P+SAA+ +AV V A
Sbjct: 5 LTPPWPAAAAAAPASAAAASAVTVEAVLA 33
>01_06_1229 + 35551522-35552169
Length = 215
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 238 PCCVHARGAYCSNSCWRCGDMHGYRGGVAGSY 333
PCCV + SC+ ++HG G GSY
Sbjct: 186 PCCVFVQET--DPSCYSVCNVHGEESGAQGSY 215
>01_06_1217 + 35485182-35485949
Length = 255
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 402 PWTTARSAEPSSAASDTAVPTAVVRAGYS 316
PW R + PSSAA+ + TA+ A S
Sbjct: 4 PWVKTRPSSPSSAAASPSPSTALAAAAAS 32
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 384 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPP 283
++EP++AA+ A A YSS+ SAPP
Sbjct: 28 ASEPAAAAAAVAASDAAAATDYSSSAGDPSSAPP 61
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 164 WVVRGLCLA-RAVPWPIEWIAAVKLVPV 244
W G C+ AV WPI W AVK +PV
Sbjct: 991 WGQWGACVGIAAVSWPIGW--AVKCIPV 1016
>07_01_0622 - 4625246-4627759
Length = 837
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 134 NWTCLYVIAVWVVRGLC 184
NW+ Y IA+ V RGLC
Sbjct: 632 NWSTRYQIAIGVARGLC 648
>01_05_0252 -
19959347-19959541,19960307-19960402,19961028-19961132,
19961220-19961439,19961515-19961584,19961659-19962181,
19962621-19962672,19963644-19963867,19963955-19964022,
19965005-19965231,19965747-19965864,19965938-19966058
Length = 672
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 170 VRGLCLARAVPWPIEWIAAVKLVPVACTREVLIVQTRVGGAEI 298
VRG C + A+P + + L P+A E + + R+GG +
Sbjct: 14 VRGCCRSAAIPLHLPPSSFSLLSPIAKGSESTVYEARLGGERV 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,671
Number of Sequences: 37544
Number of extensions: 263141
Number of successful extensions: 882
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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