Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i22
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    26   5.6  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   9.7  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   9.7  

>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 563 CRRGSRVPGQQDRGEVTQRPRGPTAGASRLRVA 465
           C  G R+ G Q+ G +  R   PTA     R+A
Sbjct: 41  CDHGGRLFGLQEPGYIYSRMMNPTADVFEKRIA 73


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 343 TRHTAASL*RNEVSDKQNANIEAQLILKSLSSVVETHIRGRATRSRD 483
           T H  ASL + EV+D  N + EA+ ++ +     ET + G  + + D
Sbjct: 95  TTHQLASLPKLEVTDHDNVS-EAETVVLNEDEEKETSLVGSVSVTED 140


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 615 SITSMVSVRCGSSALYPLSSW*QSTRAAG*RRSNT 511
           S +  +SV+ G     P+ SW  +   +  R SNT
Sbjct: 679 STSKRISVQLGKKQARPVDSWGSTPNTSSNRNSNT 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,277
Number of Sequences: 5004
Number of extensions: 48665
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)