Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i22
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0116 + 10945231-10945501,10946018-10946241,10946329-109467...    30   1.9  
03_02_0092 - 5578573-5578629,5578716-5579363,5579850-5580006,558...    30   1.9  
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910...    29   2.5  
05_02_0036 - 5879079-5879180,5879690-5879803,5880809-5880913           29   3.3  
04_01_0192 - 2245794-2246186,2246699-2247490                           28   5.8  

>10_06_0116 +
           10945231-10945501,10946018-10946241,10946329-10946725,
           10946804-10946893,10947118-10947239,10947390-10947428
          Length = 380

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 657 DRNTRSVGHRAVLLSITSMVSVRCGSSALYPLSSW 553
           DRN    GH AV++       +RCG   LY L+SW
Sbjct: 226 DRNLIPTGHAAVIIG----AGMRCGIQYLYFLNSW 256


>03_02_0092 -
           5578573-5578629,5578716-5579363,5579850-5580006,
           5580105-5580181
          Length = 312

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 550 AEYQGSRIEEK*HKGHGAQRRAHLDCGS 467
           AE   +R++E+ H+GH     AH D GS
Sbjct: 194 AELSSARVKEETHRGHRRAASAHADIGS 221


>07_03_1385 +
           26189034-26189294,26189427-26189636,26191016-26191092,
           26191196-26191340
          Length = 230

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 462 ARDPQSRCARRWAPWPLCYFSSILLPWYSATTT 560
           AR P S  A RWAPWPL   +++LL   +A  T
Sbjct: 3   ARRPGSP-APRWAPWPLLAAAAVLLLLSAAPRT 34


>05_02_0036 - 5879079-5879180,5879690-5879803,5880809-5880913
          Length = 106

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +2

Query: 275 ISKLIFVHFHLRIRHLLIVKINRHGTQRLH 364
           + + +F  + L   H++++ ++R+GT+RLH
Sbjct: 67  VKRELFHDYKLAYMHIVLIGVSRNGTKRLH 96


>04_01_0192 - 2245794-2246186,2246699-2247490
          Length = 394

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 436 SVVETHIRGRATRSRDAPAVGPRGLCVTSPLSCCPGTLLPR 558
           S ++ H+  RA    + P+VGP G   T P +     ++PR
Sbjct: 317 SQLKKHLGKRAIPMPNLPSVGPEGQIKTQPTAVLQRRMMPR 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,958
Number of Sequences: 37544
Number of extensions: 319304
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)