Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i21
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    29   0.87 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   3.5  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   3.5  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   3.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.6  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   4.6  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   8.1  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   8.1  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   8.1  

>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +1

Query: 310 F*DRVMSDSGASREEQGEEEYRGPLLLPIPAGRPRLEKGARRDSNLRPPCVVTMSLTTT 486
           F D     S   REE  E   RGPL     + RPRL    R  SN+      + + TT+
Sbjct: 209 FRDPARDPSDRVREEPREWVRRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTTS 267


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/83 (20%), Positives = 33/83 (39%)
 Frame = +1

Query: 382 LLLPIPAGRPRLEKGARRDSNLRPPCVVTMSLTTTPDGL*FNILFSTVCTAIHKTCIYIC 561
           LL  IP G   L +     + ++PP     S T  P      +L  +        C+++ 
Sbjct: 27  LLQDIPPGS--LSENDNSTTFIKPPLETASSSTPIPSSSSSGVLNPSSVRGKPVACLFVA 84

Query: 562 TFVGTRSRKDIVSERTRLCRNWG 630
           +   +RS +++ +      + WG
Sbjct: 85  SLNSSRSEEELTATVKDYFQQWG 107


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 322 VMSDSGASREEQGEEEYRGPLLLPI 396
           V+ DS   +++ GEE  R PLL+ +
Sbjct: 503 VLGDSAVEKDDDGEEATRVPLLIEV 527


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 113 KFLMGRCGGVPDIRL*NELPCT*FPKCYY 27
           KFL GRC    D  L +EL     P C Y
Sbjct: 238 KFLNGRCNKAEDCNLSHELDPRRIPACRY 266


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 508  ILFSTVCTAIHKTCIYICTFVGTRSRKDIVSERTRLCRNW 627
            +L       I++ C     F+ +R R+D++     LC+ W
Sbjct: 887  LLVECALETIYQVCALADDFMTSRIRQDLLPRLETLCQRW 926


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 679 TFKIPRSNLYHRTYNASPNFGTIAFV---LRQYLYANEYPQMYICKYKF 542
           T   P+SNLY+R  + SP +  I      + Q +++  Y   YI K  F
Sbjct: 147 TVASPKSNLYYRYSSESPKYAKILDCPDEILQLIFSYCYDASYIEKLPF 195


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 388 LPIPAGRPRLEKGARRDSNLRPPCVVT 468
           LP+P  RP+  +G RR   ++    VT
Sbjct: 367 LPVPDDRPKRRRGGRRIRKMKEQYAVT 393


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 259 FFYAGESIYGYPVEGF 306
           FFYA +++ G PVEGF
Sbjct: 205 FFYALKTMAGVPVEGF 220


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -3

Query: 706 LFARNLKLCTFKIPRSNLYHRTYNASPNFGTIAFVLRQYLYANEYPQMYICKYKFCE*LY 527
           LF  N    TF    S +   T   + N GT+    + Y  ++E P M+  +      LY
Sbjct: 690 LFGDNPAAVTFSWSESTII-ATCPPATNAGTVPVTFQNYNSSSEAPVMFTYEDNLDNELY 748

Query: 526 KL 521
           KL
Sbjct: 749 KL 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,933
Number of Sequences: 5004
Number of extensions: 73335
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)