Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22i21
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46996-5|CAA87096.1| 268|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 30 1.9
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 30 1.9
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 30 1.9
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 30 1.9
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 30 1.9
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 30 1.9
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 30 1.9
AF022979-5|ABD94089.1| 160|Caenorhabditis elegans Hypothetical ... 29 3.3
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 29 4.3
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 4.3
Z75554-10|CAA99956.1| 535|Caenorhabditis elegans Hypothetical p... 28 5.7
U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z46996-5|CAA87096.1| 268|Caenorhabditis elegans Hypothetical
protein C34C12.5 protein.
Length = 268
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 299 RGFFFETELCRTPVPPEKNREKK 367
R FF E TPVPP++N+EKK
Sbjct: 237 RYFFGRQEPSSTPVPPKRNKEKK 259
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 76 ISGTPPHRPIRNFVPKSDDL*KNGPIKILVPD 171
I G PPH P R P DD N IK L D
Sbjct: 2858 IGGHPPHYPPRGMAPPKDDHELNSKIKDLETD 2889
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 76 ISGTPPHRPIRNFVPKSDDL*KNGPIKILVPD 171
I G PPH P R P DD N IK L D
Sbjct: 2858 IGGHPPHYPPRGMAPPKDDHELNSKIKDLETD 2889
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical protein
W02B9.1a protein.
Length = 1223
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 76 ISGTPPHRPIRNFVPKSDDL*KNGPIKILVPD 171
I G PPH P R P DD N IK L D
Sbjct: 1161 IGGHPPHYPPRGMAPPKDDHELNSKIKDLETD 1192
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 706 LFARNLKLCTFKIPRSNLYHRTYNASPNFGTIAFVLR 596
+ A++L+ F +P N +H +YN+SP T++ LR
Sbjct: 192 IVAKSLRSAMFTMPTDN-HHHSYNSSPQISTLSPHLR 227
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 706 LFARNLKLCTFKIPRSNLYHRTYNASPNFGTIAFVLR 596
+ A++L+ F +P N +H +YN+SP T++ LR
Sbjct: 192 IVAKSLRSAMFTMPTDN-HHHSYNSSPQISTLSPHLR 227
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 706 LFARNLKLCTFKIPRSNLYHRTYNASPNFGTIAFVLR 596
+ A++L+ F +P N +H +YN+SP T++ LR
Sbjct: 190 IVAKSLRSAMFTMPTDN-HHHSYNSSPQISTLSPHLR 225
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 76 ISGTPPHRPIRNFVPKSDDL*KNGPIKILVPD 171
I G PPH P R P DD N IK L D
Sbjct: 2858 IGGHPPHYPPRGMAPPKDDHELNSKIKDLETD 2889
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 76 ISGTPPHRPIRNFVPKSDDL*KNGPIKILVPD 171
I G PPH P R P DD N IK L D
Sbjct: 2858 IGGHPPHYPPRGMAPPKDDHELNSKIKDLETD 2889
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 76 ISGTPPHRPIRNFVPKSDDL*KNGPIKILVPD 171
I G PPH P R P DD N IK L D
Sbjct: 1161 IGGHPPHYPPRGMAPPKDDHELNSKIKDLETD 1192
>AF022979-5|ABD94089.1| 160|Caenorhabditis elegans Hypothetical
protein T02B11.9 protein.
Length = 160
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 460 HKGVAGSNLFARLSQGVVSRQELEEEEDP 374
H GV + ++ RL+Q SRQ++E+E+ P
Sbjct: 91 HSGVNTAEVYERLNQNDNSRQKMEKEKPP 119
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 422 FSRRGLPAG--IGRRRGPLYSSSPCSSLEAPESDITRSQKKNPSTGYP*MDS 273
FS R P +G RGP +++ S E P S + Q PS GYP D+
Sbjct: 90 FSMRFSPPNFDLGGGRGPSLAATQQLSGEGPASMLNPLQTSPPSGGYPPADA 141
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 343 SREEQGEEEYRGPLLLPIPAGRPRLEKGARRDSNLRPP 456
+RE+ + E G + PIP P+L K ++R+ R P
Sbjct: 138 TREQGSDGELTGDDMEPIPIIEPKLNKESKREKRPRTP 175
>Z75554-10|CAA99956.1| 535|Caenorhabditis elegans Hypothetical
protein ZC455.5a protein.
Length = 535
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 349 LWRHRSPT*LGLKKKTPRPGIRK-WIPQR 266
LW++ PT + K + P+ I K W PQR
Sbjct: 339 LWKYEDPTDIFFKNRLPKNVILKDWFPQR 367
>U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical
protein F20D12.7 protein.
Length = 158
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 397 ELEEEEDPCILLLPVLLWRHRSPT*LGLKKKTPRPGIRKWIPQRKKKKFESRQGKI 230
E EE +P +LL ++ R +G K G+ K++ RK+KKF+S +I
Sbjct: 85 EEEEITEPSSVLLVMITMGGRMANVVGTMKLYK--GLGKYLSDRKRKKFQSTTERI 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,814,696
Number of Sequences: 27780
Number of extensions: 417134
Number of successful extensions: 1100
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -