Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22i18
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 31 1.1
10_08_0837 - 20925345-20926178 30 1.5
07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340... 30 1.9
12_02_1234 - 27227262-27227647,27227715-27227781 29 4.5
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 29 4.5
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397... 29 4.5
08_02_0197 - 14150787-14151440 28 5.9
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 28 5.9
03_02_1008 - 13170630-13171481 28 7.8
02_03_0262 + 17015383-17015619,17017932-17018879 28 7.8
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 463 DGSEMLKAVYHTLDHESPNPDDDSSIEPEANDLDSFIV--LVDRTLQFDDTDGDGYVSYP 636
DG E LK + LD + + + +L + V++ ++ DTDGDG V+Y
Sbjct: 319 DGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTDEEVEQMIREADTDGDGQVNYD 378
Query: 637 E 639
E
Sbjct: 379 E 379
>10_08_0837 - 20925345-20926178
Length = 277
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 241 PHHPPGQTPVERPHHHY 291
P HP +P RPHHHY
Sbjct: 24 PLHPTPTSPTARPHHHY 40
>07_01_0451 -
3404749-3405171,3405444-3405599,3405711-3406583,
3406847-3406942
Length = 515
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Frame = +1
Query: 277 PHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVL-----TPAMLASMTPEELEFHYFSIHD 441
PH+H K + F G L A H+ +S VL P +A+ P + +
Sbjct: 400 PHYHLKEVNIAGFYGQKDQLELAHHILRNSVVLQAMNIDPRPIAACDPSRMAI--LEAFN 457
Query: 442 FDRNTKLDGSEMLKAVYHTLDHESPNPDDDSSIEPEANDLDSFIVLVDRT 591
F +K+ + KA + + H S D P + F + D+T
Sbjct: 458 FVDGSKVAMKYLCKADHRNVVHVSDVSRKDVENVPAYRLVSPFWIEFDKT 507
>12_02_1234 - 27227262-27227647,27227715-27227781
Length = 150
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 430 SIHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSS--IEPEANDLDS 567
S+ D D N+ + S ML + D ESP+ SS PE N LD+
Sbjct: 2 SVLDLDINSDDESSSMLGVGHREKDDESPSTSGKSSPPPPPEQNPLDA 49
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 217 GVFALRRGPHHPPGQTPVERPHHHYKPMGTGS 312
G F + P++PP P + HHH G+G+
Sbjct: 92 GYFNQGQQPYYPPPPLPYDHCHHHCGDEGSGA 123
>07_03_1392 -
26238885-26239007,26239137-26239235,26239636-26239720,
26239825-26240028,26240360-26240682,26241904-26242575
Length = 501
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 427 FSIHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSSIEPEANDLD 564
F + +++K + + HT E PNP +IEP+ D D
Sbjct: 10 FLLFSKPKSSKKKPKQEAEPQVHTQPEEPPNPSPSPAIEPDLRDSD 55
>08_02_0197 - 14150787-14151440
Length = 217
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 229 LRRGPHHPPGQTPVERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLASMTP 405
L + P PP P HH +KP+ T + S LL ++D + T TP
Sbjct: 18 LSKNPRTPP-PPPAMHHHHAHKPLITALTSTSSFLLRSVDVSKDDKPLETATTTTPPTP 75
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = +1
Query: 214 NGVFALRRGPHHPPGQTPVERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLA 393
N VFAL G PP + R HY P G ++L D ED TPA A
Sbjct: 571 NYVFALLTGYRDPPAGVQI-REGLHYNPYFPGGAIAMPKMLIDGAVEYEDG---TPATEA 626
Query: 394 SMTPEELEF 420
M + + F
Sbjct: 627 QMGKDVVSF 635
>03_02_1008 - 13170630-13171481
Length = 283
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 583 PPAQ*MSLNRLPPVLLKNRHLDSDFHGLKC 494
PPA S++ +P V + RHL D H C
Sbjct: 161 PPATQSSIDAMPTVKITQRHLSGDSHCPVC 190
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 457 KLDGSEMLKAVYHTLDHESPNPDDDSSIE 543
K+DG ++ VY++ D+ S DD S E
Sbjct: 323 KMDGKKLYDGVYNSSDYSSDTASDDESDE 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,253
Number of Sequences: 37544
Number of extensions: 380711
Number of successful extensions: 1192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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