Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i12
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    29   0.50 
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.6  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   6.1  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   8.1  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   8.1  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 193 IFSSDHMSHPSYWLF-HVWSLILLYYCIPVVASW 95
           + SSDH +HP  W +   WS++ ++  + +   W
Sbjct: 63  LISSDHPAHPQNWHWAKRWSIVFMFCLMQIYVIW 96


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 169 HPSYWLFHVWSLILLYYCIPVV 104
           +P YW F +  L+ L+YC  V+
Sbjct: 65  YPEYWAFKLVELLSLFYCAYVM 86


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 485 QLDMLRHWRALSCFTEIADKPLRTKSSLIPTLTSGIAD 372
           Q DM+       C  E+ +  LR  +SL+P  TS ++D
Sbjct: 655 QADMITMQSLYYCPIELIENLLRAITSLLPKNTSNLSD 692


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 307 RELQADEHTGHLMVSGYRRSWTSAMPEVS---VGISEDLVRSGLSAISVKHDSALQ 465
           R  + D++ G+     Y+RSW     +     VG+   L++SG     ++  + LQ
Sbjct: 27  RSRKTDDNEGYTWEGEYQRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRDTTPLQ 82


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 487 ETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKP 591
           E   VP  +  +RNS R  H       PYL+  +P
Sbjct: 90  ENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHRP 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,349
Number of Sequences: 5004
Number of extensions: 58165
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)