Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22i12
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600... 35 0.073
11_03_0068 + 9564354-9565180,9566658-9568704 32 0.39
11_06_0110 + 20212221-20214011,20214072-20214368 31 0.90
11_03_0060 - 9406273-9407142 29 4.8
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 29 4.8
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206... 29 4.8
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 28 8.4
02_05_1146 - 34440647-34441674,34442138-34443896 28 8.4
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 28 8.4
>01_06_1642 +
38857326-38857581,38858577-38858818,38859001-38860004,
38860170-38860587,38860673-38860789
Length = 678
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 169 HPSYWLFHVWSLILLYYCIPVVASWLF 89
HP+ W+ VWSL+L+Y +V WLF
Sbjct: 497 HPALWVTIVWSLLLVYMIYLLVFPWLF 523
>11_03_0068 + 9564354-9565180,9566658-9568704
Length = 957
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 190 FSSDHMSHPSYWLFHVWSLILLYYCIPVVASWL 92
F D SHP Y L++ ++ YYC P++ W+
Sbjct: 745 FMLDSWSHPPYPLYNFQ--MITYYCFPIIPEWM 775
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 31.1 bits (67), Expect = 0.90
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 295 CCEGRELQADEHTGHLMVSGYRRSWTSAMPEVSVGISEDLVRSGLSAISVKHDSALQCLS 474
CC+ R ++ TGH++ R + +V G+ ++ G S IS++H L LS
Sbjct: 74 CCQWRGVRCSNLTGHVVKLNLRNDYA----DVGTGLVGEI---GHSLISLEHLRYLD-LS 125
Query: 475 MSNCETLQVPPG-IVKHRNSFRSLHRPDLKRVPYLRRMKP 591
M+N L P G + + SFRSL +L + + + P
Sbjct: 126 MNN---LAGPTGHVPEFLGSFRSLRYLNLSGIVFSGMVPP 162
>11_03_0060 - 9406273-9407142
Length = 289
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 190 FSSDHMSHPSYWLFHVWSLILLYYCIPVVASWL 92
F D HP Y L++ + YYC P++ W+
Sbjct: 196 FMLDSWYHPPYPLYNFQ--MTTYYCFPIIPEWM 226
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1
Query: 460 LQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPDELEL----LFRGYAD 627
LQ L + NC L+ P V H RSL D+ P L ++ + LEL +G+
Sbjct: 587 LQFLILKNCPLLESLPRCVGHLKKLRSL---DISGTPMLNVIQFNLLELTELNCLQGF-- 641
Query: 628 LPARSLQEN 654
+P S+Q+N
Sbjct: 642 VPTTSVQQN 650
>01_02_0006 +
10118766-10118775,10119383-10119526,10120534-10120659,
10120885-10121003,10121355-10121609
Length = 217
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 157 NMKDGSCDLKKKSNNSLQMNPVASGDNVTTGLSA 258
N++D S KSN S ++ P GDNVT G SA
Sbjct: 64 NIQDNSLVHVAKSNLSGKVFPTIIGDNVTVGHSA 97
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 512 IPGGTCSVSQLDMLRHWRAL-SCFTEIADKPLRTKSSLIPTLTSGIA 375
+P +S D+L+ W+ L CF +DKPL +SSL L +G++
Sbjct: 40 LPASAPHLSASDLLKLWKGLFFCFWH-SDKPL-YQSSLATRLAAGVS 84
>02_05_1146 - 34440647-34441674,34442138-34443896
Length = 928
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 217 PVASGDNVTTGLSAHRLKEELPLLVPCCEGRELQADEHTGHLMVSGYRRSWTSAMPE 387
PV +GD T G S HRL V + +++ DE + SGY W + P+
Sbjct: 378 PVDAGDKETWGDSEHRLAYVAETTVIFKDIVQVR-DEQWWRALTSGYVTQWAAMHPQ 433
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 454 SALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRM-KPDELELLFRGYADL 630
++L+ L S C L+ P + +S +SLH + + L + P LE LF DL
Sbjct: 1377 TSLKTLVFSECSYLRSLPATLHQISSLKSLHLSSCESIDSLPHLGLPGSLERLFIAGCDL 1436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,497,539
Number of Sequences: 37544
Number of extensions: 404650
Number of successful extensions: 1029
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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