Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i11
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677...   131   5e-31
10_08_0955 + 21789616-21789778,21791622-21791688,21792285-217923...    31   0.68 
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401     30   1.6  
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135...    29   2.8  
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637...    29   4.8  
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606...    29   4.8  
03_05_1020 + 29748135-29748281,29748411-29748794,29749127-29749627     28   6.4  

>07_03_0465 +
           18465966-18466206,18467424-18467443,18467444-18467729,
           18468557-18468666,18468744-18468909,18469303-18469433
          Length = 317

 Score =  131 bits (317), Expect = 5e-31
 Identities = 50/102 (49%), Positives = 76/102 (74%)
 Frame = +2

Query: 107 RGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKSSRH 286
           +G++ ML+K+++ DFG CPRVYC  QP LP+G SD+   + VK+YCP+C D+Y P+S   
Sbjct: 214 KGLAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIHRSSTVKIYCPKCEDIYYPRSKYQ 273

Query: 287 HHTDGAYFGTGFPHMVFMVHPDKRPKRPASQFVPRLYGFKIH 412
            + DGAYFGT FPH+  M +   +P++P+ ++VPR++GFK+H
Sbjct: 274 GNIDGAYFGTTFPHLFLMTYEHLKPQKPSQRYVPRVFGFKLH 315


>10_08_0955 +
           21789616-21789778,21791622-21791688,21792285-21792346,
           21792508-21792729,21792993-21793102,21793195-21793236,
           21793271-21793303
          Length = 232

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 107 RGISQMLDKFQSGDFGYCPR 166
           +G++ ML+KF++ DFG CPR
Sbjct: 203 KGLAAMLEKFKNYDFGRCPR 222


>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
          Length = 500

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = -1

Query: 482 CCTTGCAAAAWSSQPPAGFGRRA---GES*TRIVLVRIERQVVLVVYRGA 342
           CC+T CA A W        G +    GE    +VL R+E +      R A
Sbjct: 25  CCSTPCAVATWRRSVKRKLGEKGDGEGEGEGAVVLARVEAEEEAAALREA 74


>03_02_0750 +
           10909130-10909616,10912257-10912916,10913139-10913544,
           10914376-10914757,10914918-10915679,10916106-10916165,
           10916695-10917105
          Length = 1055

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 482 CCTTGCAAAAWSSQPPAGFGRRAGES*TRIVLVRIERQVVLVVYRG 345
           CC  G   AA +    AG GR+ G + T + LV +     + V  G
Sbjct: 5   CCGRGAGGAAEAGAAGAGGGRKRGCAGTALALVALAAAAAVAVLEG 50


>04_04_0687 -
           27262742-27262784,27263429-27263584,27263698-27263783,
           27263881-27264188,27265337-27265455,27265989-27266075,
           27266440-27266546
          Length = 301

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 482 CCTTGCAAAAWSSQPPAGFGR-RAGES*TRIVLVRIERQV 366
           C  +GC AAA     PAGF    + E+ T     R++ ++
Sbjct: 182 CLDSGCGAAACDDDKPAGFAHLGSAEADTSAAAARVDSEI 221


>03_05_1011 +
           29658144-29658310,29659531-29659676,29660526-29660602,
           29660682-29660804,29661817-29661924,29661995-29662075,
           29662157-29662309,29662469-29662540,29662745-29662863,
           29662958-29663071,29663176-29663221,29664865-29664933,
           29665662-29665808,29666410-29666706
          Length = 572

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 446 NSKPPQRSLSYNNETKTSSNIPK*FNKRRELSRRPVTPAATDIQYADSCI 595
           N++PP+R      + KTS ++P   + R  L +    PA  D    D  I
Sbjct: 486 NTRPPRRRSGRYTQAKTSQHMPSDIDIRDSLDKPNPVPAEADKSDLDEFI 535


>03_05_1020 + 29748135-29748281,29748411-29748794,29749127-29749627
          Length = 343

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = -2

Query: 475 RQAALRRLGVRSRLLD 428
           R+ ALRRLGVR+R+LD
Sbjct: 260 RRGALRRLGVRARVLD 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,420,038
Number of Sequences: 37544
Number of extensions: 406189
Number of successful extensions: 1056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)