Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i11
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.6  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   8.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   8.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 124 HLTNAPSHYIWCKRDK 77
           H  + P+HY+W   DK
Sbjct: 103 HEMSIPNHYLWLYHDK 118


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 506  CYLMSSFRCCTTGCAAAAWSSQP 438
            C+ M     C +GC A    S+P
Sbjct: 1702 CFTMRPVVSCASGCTAVETKSKP 1724


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 109 PSHYIWCKRDK 77
           P+HY+W  +DK
Sbjct: 139 PNHYLWLYKDK 149


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 223 FGGDVRQTNWQHRLAFTVYTW 161
           + G   Q  WQ ++ F   TW
Sbjct: 357 WSGFCSQCIWQEKIVFAAVTW 377


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 462 CGGLEFAAA 436
           CGGLEF AA
Sbjct: 285 CGGLEFTAA 293


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 602 IIVLLSLFTFYNVKHISS*SLFYVSVINIFVN 697
           +I++LSL T+   + + S    YV++  I  N
Sbjct: 7   VILILSLLTWTYAEELYSDKYDYVNIDEILAN 38


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 602 IIVLLSLFTFYNVKHISS*SLFYVSVINIFVN 697
           +I++LSL T+   + + S    YV++  I  N
Sbjct: 7   VILILSLLTWTYAEELYSDKYDYVNIDEILAN 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,453
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)