Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i09
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    26   7.2  
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205...    26   9.6  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    26   9.6  

>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 231 LTNIS*LQNTRMLLHGLTTLASYVTNIGNIERYT*LQYDIL 109
           +TNI+ ++  R    GL  ++   T +GN++R   + +D+L
Sbjct: 668 ITNIAKVEQLRR--QGLKVVSGLSTELGNVKRAATMDFDVL 706


>06_01_0280 -
           2056449-2056487,2056613-2056930,2057025-2057171,
           2057273-2058112,2059044-2059117,2059515-2059647,
           2059804-2059941
          Length = 562

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +2

Query: 5   IRLVSHS*FCFVRLISRLAYGC*IRFYHSLNGSSMSISYCSYVYRSMLPILVT*LASV-V 181
           +R ++    C VR I+    GC +   HSL    + I YC+ +    +P L+  L S+ V
Sbjct: 268 LRSLTRLYLCRVR-ITENELGCLLS--HSLALEQLEIRYCNRIVCLKVPCLLQRLISLKV 324

Query: 182 SPCKSIRVFCNQ----EMFVSYSSKIYLRL 259
             C  +++  N+     MF     K  L+L
Sbjct: 325 FGCDKLKLIENEAPNVSMFAFQGDKTELKL 354


>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
            34543642-34543731,34544324-34544390,34544483-34544676,
            34544770-34545510,34545596-34545661,34545783-34545908,
            34545978-34546073,34546153-34546521,34546602-34546724,
            34546802-34546906,34547394-34547531,34547665-34547760,
            34548018-34548275
          Length = 1311

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 201  EYFVIKKCS*VIRLKSIYVYDIVLSLNVNVCSIIVSVEPNC 323
            E+  I  C  V  ++ ++  D +  L V++C  +  +E NC
Sbjct: 1027 EFLEISYCEMVTSIRMLHPLDRLKHLVVDICPNLQEIELNC 1067


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,769,187
Number of Sequences: 37544
Number of extensions: 100828
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)