Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22i04
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    30   0.37 
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    28   1.5  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    27   2.0  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    26   6.0  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   7.9  

>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 632 CRNFVRNTCNRGASCRYLHKI 694
           C  F R  C+ G+ C YLH++
Sbjct: 117 CLYFARGMCSEGSKCEYLHRL 137


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 614 DVEETMCRNFVRNTCNRGASCRYLH 688
           D  E  CR    + C RG  C ++H
Sbjct: 143 DFREACCRQHETSECQRGGLCNFMH 167


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 629 MCRNFVRNTCNRGASCRYLHK 691
           +C++++R  C +G  C +LH+
Sbjct: 53  VCKHWLRGLCKKGEQCDFLHE 73


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 611 NDVEETMCRNFVRN-TCNRGASCRYLHK 691
           N      CR +  N  C +GA+CR++H+
Sbjct: 202 NSPSAVYCRYYNANGICGKGAACRFVHE 229



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 623 ETMCRNFVRNTCNRGASCRYLHKI 694
           +T+C  F+   CN+   C   H++
Sbjct: 233 KTICPKFLNGRCNKAEDCNLSHEL 256


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 629 MCRNFVRNTCNRGASCRYLHKI 694
           +C+ F++N C  G +C+  H +
Sbjct: 3   VCKYFLQNRCRYGTNCKNQHTV 24


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 287 KRNKCEAQ--TQPSPNFKHMKKYLKCKFGEESHS 382
           K++K EA+  + P P+ K +KK  K K  EES S
Sbjct: 52  KKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSS 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,387
Number of Sequences: 5004
Number of extensions: 50202
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)