Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22h22
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 130 1e-31
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 111 1e-25
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 54 3e-08
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 48 1e-06
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 44 2e-05
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 40 4e-04
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 36 0.006
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 35 0.010
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 34 0.018
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 34 0.023
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 33 0.031
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 32 0.094
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 30 0.38
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 28 1.5
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.0
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 8.1
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 8.1
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 8.1
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 8.1
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 130 bits (315), Expect = 1e-31
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Frame = +3
Query: 3 LHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPS-TPSH-YTLHAVLVHSGDNHG 176
L L RF YD RD VK NDR EF EI+L+PYL E + SH Y LH VLVH GD HG
Sbjct: 420 LQLKRFDYDMLRDMMVKINDRHEFPLEIDLEPYLSETADKSESHVYVLHGVLVHGGDLHG 479
Query: 177 GHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGG------KEDAPHMARKATSAYM 338
GHY I P+ D W KFDDD V+R T +E +E NYGG K + ++ +AYM
Sbjct: 480 GHYYALIKPEKDSNWFKFDDDRVTRATIKEVLEDNYGGEPAGRAKGYNGNPFKRFMNAYM 539
Query: 339 LIYIQTTQLKYVLQDASESDIPPDLCDRINEEMR 440
L+Y + ++L ++L + D+P + + ++EE R
Sbjct: 540 LVYFRKSRLDHILSPVTAEDVPFHVRNTLDEEHR 573
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 111 bits (266), Expect = 1e-25
Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Frame = +3
Query: 3 LHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYL--QEVPSTPSHYTLHAVLVHSGDNHG 176
L L RF+YD +RD +K NDR+EF E + +L + S Y L+ VLVHSGD H
Sbjct: 403 LQLKRFEYDFERDMMIKINDRYEFPLEFDAKAFLSPEADQSQNCEYVLYGVLVHSGDLHN 462
Query: 177 GHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKE------DAPHMARKATSAYM 338
GHY + + DG W K+DD V+R T +E +E NYGG +P ++ SAYM
Sbjct: 463 GHYYALLKTEKDGPWYKYDDTRVTRATLREVLEENYGGDYIMHPPFRSPVKLKRFMSAYM 522
Query: 339 LIYIQTTQLKYVLQDASESDIPPDLCDRINEEMR 440
L+Y++ +L ++ S +IP L + +N ++
Sbjct: 523 LLYLRKDKLDELMNPVSADEIPEHLKEALNPSIQ 556
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 53.6 bits (123), Expect = 3e-08
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 LHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDN-HGG 179
+H RF ++ + S K + + + E NL PY+ + P+ Y L VLVH+G + G
Sbjct: 331 IHFKRFTFNGFQ--SSKISKQISYPESFNLGPYMSD-PNCSCWYELIGVLVHAGGSTRSG 387
Query: 180 HYVVFINPKGDGKWCKFDDDVVS 248
HY F +G W KFDDD VS
Sbjct: 388 HYYSFCK-SSNGVWLKFDDDFVS 409
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 48.4 bits (110), Expect = 1e-06
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = +3
Query: 3 LHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVH-SGDNHGG 179
LHL RF+Y+ ++ K F E+ L ++ + Y L +V+VH G H G
Sbjct: 315 LHLKRFKYNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSVIVHVGGGPHRG 374
Query: 180 HYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAPHMARKATSAYMLIY 347
HYV + K G W FDD+ V+ + ++ +G D P A +AY+L Y
Sbjct: 375 HYVSIVRTKTYG-WVLFDDENVTP-VNENYLQRFFG---DQPGQA----TAYVLFY 421
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 108 EVPSTPSHYTLHAVLVHSGDN-HGGHYVVFINPKGDGK--WCKFDDDVVSRCTKQE 266
E + P +Y L A++ H G + H GHYV FI + DGK W F+D+ V + E
Sbjct: 705 ESTNVPVNYNLKAIISHKGSSAHAGHYVAFIRKEIDGKQQWVLFNDEKVLQVASLE 760
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 3 LHLLRFQYDPQRDASV---KFNDRFEFYEEINLDPYLQEV--PSTPSHYTLHAVLVHSGD 167
+HL RF + D K +D EF +E++L+ ++ S+ Y L V+VHSG
Sbjct: 748 IHLKRFFQEISHDGYANPKKISDFIEFEQELDLNEFVMPHLRASSSFRYRLFGVIVHSGT 807
Query: 168 NHGGHYVVFI 197
+ GHYV ++
Sbjct: 808 LNYGHYVAYV 817
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 123 PSHYTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVV 245
PS+Y L A + H G GHY+ + + +WC DD +V
Sbjct: 356 PSNYNLFAFICHYGQLENGHYISDV--LFNNEWCHIDDSIV 394
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 35.1 bits (77), Expect = 0.010
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Frame = +3
Query: 6 HLLRFQYDPQRDASVKFNDRFEFYEEINLD------PY-LQEVPSTPSHYTLHAVLVHSG 164
HL RF +R K +D EF + NLD Y L E + Y L+AV H G
Sbjct: 873 HLKRFS--SERRFRDKIDDLVEFPID-NLDMSMRTGSYKLSEKENPKLIYELYAVDNHYG 929
Query: 165 DNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 272
GGHY F +G++ FDD V+ +E +
Sbjct: 930 GLGGGHYTAFAKNPDNGQFYCFDDSRVTPVCPEETV 965
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 34.3 bits (75), Expect = 0.018
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 132 YTLHAVLVHSGDN-HGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAPH 308
Y L+AV+ H G + GGHY V + W + DD + R +
Sbjct: 436 YDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHIHRVPIHDVENSELSADPSLSK 495
Query: 309 MARKATSAYMLIY 347
+ AY+L Y
Sbjct: 496 LGHGDRVAYLLFY 508
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 33.9 bits (74), Expect = 0.023
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 129 HYTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 272
HY L +++ HSG GHY+ + D W K +D ++++ + EA+
Sbjct: 285 HYILRSLITHSGSVTYGHYLCY--RLQDDIWWKANDSLITKSSLNEAL 330
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 33.5 bits (73), Expect = 0.031
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 132 YTLHAVLVHSGDN-HGGHYVVFI-NPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAP 305
Y L VL H+G + GHY +I N +W +F+D VS E IE GG E
Sbjct: 397 YDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVS-IVPAEKIETLDGGGE--- 452
Query: 306 HMARKATSAYMLIY 347
A SAY+L+Y
Sbjct: 453 -----ADSAYILLY 461
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 31.9 bits (69), Expect = 0.094
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 126 SH-YTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDA 302
SH Y L AV VH G GHY +I+ + + K++D+ V+ + E G +
Sbjct: 1057 SHSYDLLAVFVHRGQASFGHYWTYIHDFENNVYRKYNDEYVTVVDESEIFADTTGNNAN- 1115
Query: 303 PHM 311
P+M
Sbjct: 1116 PYM 1118
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 132 YTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 272
Y L+AV H G GHY + + KFDD + ++ +
Sbjct: 790 YDLYAVDNHHGFMSNGHYTAYARDASSQTFFKFDDTAICEIDPEDIV 836
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 132 YTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 272
Y L++V+ H G GHY+ + + +W DD + + E +
Sbjct: 379 YQLYSVVCHKGTLDTGHYIAYTYYQ--NQWFLLDDTTIVEVKESEVL 423
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 382 TLPNPTYRQISVIESTKKCDTRWRLAD 462
T NP RQ++ IE+ K C W D
Sbjct: 51 TCENPQVRQLAAIEARKLCHKYWSSVD 77
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 42 ASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGG 179
+ V FND Y + + + V + H+ H ++V+SG GG
Sbjct: 405 SEVPFNDSNSIYHLFQSELFPKIVVNESRHHIPHYIIVNSGGIRGG 450
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = -1
Query: 616 TQNSVTKP*LLIYLTNFNANGSSKNTLHQQKLHMKHRTRLICXXXXXXXXXXXPTAISYR 437
+ +S T P ++T+ ++ S +++ L L A+S
Sbjct: 67 SSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSS 126
Query: 436 ISSLIRSQRSGGMSDSEAS 380
SSL+ S S GMS S S
Sbjct: 127 SSSLVASSSSSGMSSSSLS 145
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/51 (25%), Positives = 19/51 (37%)
Frame = +3
Query: 54 FNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGGHYVVFINPK 206
FN EF E+ N + + E P H ++ D HY P+
Sbjct: 1130 FNQHLEFVEQRNTNAMVDEGSDAPFHVGNEYYVIAGSDPSDFHYCFCRQPE 1180
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 609 FWVCIGIYLFYCNNL 653
F C+ IYL YCN L
Sbjct: 445 FTACVEIYLSYCNTL 459
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 284 VVVFDGFLLSATRHHVVVELTPLSVA 207
VVVF G LL+ + + + LTPL +A
Sbjct: 103 VVVFTGELLAKAENMIRMGLTPLEIA 128
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +3
Query: 141 HAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNY--GGKED 299
H V+SG + G +F + K FD + C +Y+Y G K D
Sbjct: 692 HITRVYSGTDDGSSVSIFEDTSSSTKQKIFDQPTTNDCDVMRPRQYSYSAGMKSD 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,705
Number of Sequences: 5004
Number of extensions: 54968
Number of successful extensions: 174
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -