Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h22
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +3

Query: 9   LLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGGHYV 188
           +L+F+Y    DA +KF++   +  +I    +++++  TP+ Y  +        N+    +
Sbjct: 65  MLQFRY---LDARLKFSNIAPYLNQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVL 121

Query: 189 VFINPKG 209
           V I+P G
Sbjct: 122 VSIDPSG 128


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 708 QFRLKIVNTFRQKFYXFKINYYSKINIYLYKPKIPLQNLN 589
           Q  +++ NTF+   Y F +N   +I     K  + L+  N
Sbjct: 521 QSDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYN 560


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 281 LRREGRRPSHGQESHKRLHAYLHSNY 358
           +RR+ RR ++G   H   H   H+N+
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANH 286


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 66  FEFYEEINLDPYLQEVPSTPSHY--TLHAVLVHSGDNHGG 179
           FEF ++   D  LQ + +TP  +   L A+  H G  + G
Sbjct: 75  FEFCQDSGYDKILQVLGATPRDFLQNLDALHDHLGTLYPG 114


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 648 NLF*TNKIFGETYSRFLIE 704
           NLF  NK  GE  +RF+ E
Sbjct: 194 NLFDGNKELGEQMNRFINE 212


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 180 VLRGCRPSERAQREA 136
           +LR  RPS++ +REA
Sbjct: 343 ILRMSRPSDKEEREA 357


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 373 FYKTLPNPTYRQISVIESTKKCDTRW 450
           FYK  P+  YR   V E  K     W
Sbjct: 194 FYKQQPDLNYRNSDVREEMKNIMKFW 219


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 66  FEFYEEINLDPYLQEVPSTPSHY--TLHAVLVHSGDNHGG 179
           FEF ++   D  LQ + +TP  +   L A+  H G  + G
Sbjct: 75  FEFCQDSGYDKILQVLGATPRDFLQNLDALHDHLGTLYPG 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,271
Number of Sequences: 438
Number of extensions: 4414
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)