Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h19
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    31   0.13 
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   2.8  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   5.0  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   6.5  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    25   8.7  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 35  GNQRDLARAKNQKKQVEMQKKKNASEKT 118
           GNQRD+ RA+N KK  +  KKK A + T
Sbjct: 4   GNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 56  RAKNQKKQVEMQKKKNASEKTGLSLQ 133
           +AKN+KK+ + QKKK  + K  L  Q
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQ 120


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 420 LNYML*KRS*VETENDLNIKKWCEDCHNHICI--SIYANL 533
           +NY    +   + EN++ I+++ E CH   C    IY N+
Sbjct: 172 INYSEPLKESQKKENEVRIQEFVESCHGQYCTFQQIYNNI 211


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 588 ILGCTILYIQTYSVKINIQDLHKY*YIYDCDNPHTTF*YSDHSQFQLSSAFIT 430
           I GCTIL+++  S+    +DL K      CD   T F   +   F +  A IT
Sbjct: 673 IQGCTILFLRLDSIPALKEDL-KLLVTDICDQTVTEF-LKNFGSFNIQDAVIT 723


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 14  GQLVDDGGNQRDLARAKNQKKQVEMQK 94
           G+L+ DG N + L+R     +QV+M++
Sbjct: 107 GELLPDGSNVKTLSRYPKVLEQVDMKR 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,988
Number of Sequences: 5004
Number of extensions: 38357
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)