Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h19
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.3  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 53  ARAKNQKKQVEMQKKKNASEKTG 121
           ARAK + K+ E   KK  S K+G
Sbjct: 332 ARAKKKSKKKESDDKKVISSKSG 354


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 101 FSFFAFLLVSFGFWRGPSPSDYHRRQPAGHN 9
           +  F  +LV+   W      + H R P+ HN
Sbjct: 315 YLLFTMILVTLSIWITVCVLNVHFRSPSTHN 345


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 459 ENDLNIKKWCEDCHNHICISIYANLEC 539
           E D+ +++ C++C    C+++    EC
Sbjct: 230 EIDMYMRRKCQECRLKKCLTVGMRPEC 256


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 459 ENDLNIKKWCEDCHNHICISIYANLEC 539
           E D+ +++ C++C    C+++    EC
Sbjct: 27  EIDMYMRRKCQECRLKKCLTVGMRPEC 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,374
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)