Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h16
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    29   0.54 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   0.72 
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    29   0.95 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    29   0.95 
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.3  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    27   2.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   3.8  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   8.9  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    25   8.9  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +1

Query: 349 STQTGPSGL-VESLEMVRRGIILEQAANQRPLKGILNAASALDAFK*STRITKLKLTSRP 525
           S+ T PS   + S  +V R       A     KG+ NAAS+  +F  S  I+K   TSR 
Sbjct: 589 SSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRL 648

Query: 526 SIVTVP-SAIFATRFHRPTSTSAMVKSSASLASNITSCT 639
           S   +P S + A    +       +KS      N+ + T
Sbjct: 649 STKKLPGSTMKAASALKEYPQQQSMKSGGEKQDNLVTIT 687


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 465 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTV--PSSN--IHICYGQVFCEPC 617
           C +C + +   +++    + +HS C KC  C+    PSS         Q+FC+ C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  KTVKTKYFFIFKHCCFRYYSNFIS 83
           K V+T+YFF +   C   Y NF++
Sbjct: 337 KNVQTEYFFCYVGICIGVYGNFVA 360


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 681 EQFADPRFAENMKQFMAGKDGAP 749
           E   DP F EN KQ++  K G+P
Sbjct: 266 EYLNDPDFEENRKQYLQNKSGSP 288


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 603 FCEPCFQHHVLHRHKDNPN 659
           FC PC +   LH HKDNPN
Sbjct: 17  FCGPCRR---LHYHKDNPN 32


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 87  HTYPKKSSLIMDKGQEQVKKPF 152
           HTYP  SSLI D    +V+ PF
Sbjct: 8   HTYPAVSSLIADLKSRKVQGPF 29


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 487 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 657
           ST I     ++ P   TVP  S    +    P STS+   SS+ L S  TSCT   + P
Sbjct: 288 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 487 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 657
           ST I     ++ P   TVP  S    +    P STS+   SS+ L S  TSCT   + P
Sbjct: 342 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 574 PTSTSAMVKSSASLASNITSCTDIRTTPMXXXXXXXXXXRTPDLP 708
           PTSTS+   +S  L +  TSCT   + P            TP +P
Sbjct: 152 PTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP 196



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 574 PTSTSAMVKSSASLASNITSCTDIRTTP 657
           PTSTS+   +S+ L +  TSCT   + P
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 236



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 574 PTSTSAMVKSSASLASNITSCTDIRTTP 657
           PTSTS+   +S+ L +  TSCT   + P
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 292


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 405 DNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA 524
           D+P  +S  E+ EG+ + S+ S    +++++   E +KQA
Sbjct: 557 DSPNVASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQA 596


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 390 NGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENN 500
           +G + D+  ASS+S AS G   RSV  R   +  E++
Sbjct: 517 DGADNDDSSASSESFASAGAHSRSVFPRRSNVSEESH 553


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 10  QKPSKRNIFSF-SNIAVFVTIQILFQYIP-TQKSQV*LWI 123
           Q PS R      SN+  F++IQ L +Y+P T   +V  WI
Sbjct: 113 QAPSDRTWSRMVSNLFAFISIQFLNRYLPNTTAVKVVSWI 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,069
Number of Sequences: 5004
Number of extensions: 68652
Number of successful extensions: 231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)