Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h15
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    29   3.7  
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical pr...    29   4.9  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   4.9  
Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical p...    28   6.5  
AF067213-1|AAC17000.2|  462|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical p...    28   8.6  
Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical...    28   8.6  

>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
           protein F26H11.2c protein.
          Length = 2266

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 207 PHPYKSRSGKTNNTINDNKVDQNIKKLLVLSEPAAD--PNIVEKIIQRAKKQKPLLENTE 380
           P P K R+ +     +  +V+  I+++ V S PA+   P    K   R KK         
Sbjct: 108 PPPTKKRAAQRETPSDAEEVEVKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKS 167

Query: 381 VKKGKEKSILFPEEKQSFQDFEKELF 458
           +K+ +E  I   E+ +  ++   + F
Sbjct: 168 LKRQEEDIIYMDEDSEEEEESSDDEF 193


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
           protein F26H11.2b protein.
          Length = 1693

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 207 PHPYKSRSGKTNNTINDNKVDQNIKKLLVLSEPAAD--PNIVEKIIQRAKKQKPLLENTE 380
           P P K R+ +     +  +V+  I+++ V S PA+   P    K   R KK         
Sbjct: 108 PPPTKKRAAQRETPSDAEEVEVKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKS 167

Query: 381 VKKGKEKSILFPEEKQSFQDFEKELF 458
           +K+ +E  I   E+ +  ++   + F
Sbjct: 168 LKRQEEDIIYMDEDSEEEEESSDDEF 193


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
           protein F26H11.2a protein.
          Length = 1691

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 207 PHPYKSRSGKTNNTINDNKVDQNIKKLLVLSEPAAD--PNIVEKIIQRAKKQKPLLENTE 380
           P P K R+ +     +  +V+  I+++ V S PA+   P    K   R KK         
Sbjct: 108 PPPTKKRAAQRETPSDAEEVEVKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKS 167

Query: 381 VKKGKEKSILFPEEKQSFQDFEKELF 458
           +K+ +E  I   E+ +  ++   + F
Sbjct: 168 LKRQEEDIIYMDEDSEEEEESSDDEF 193


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 327 EKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKE 452
           EK  +  KKQK LL+  E  + KEK      EK+  ++ E+E
Sbjct: 194 EKRREEKKKQKELLKEKERSERKEKERELEREKEKSREKERE 235


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 397 KNPSFSLKKNNHF--KTLKKNCFVAELHNYIKKYMYMDIP 510
           + P  ++ KN+ F  KTL+ N FV   +N+ KK +  ++P
Sbjct: 222 RKPERNMTKNSMFIKKTLEVNAFVINCYNHSKKAVKPEVP 261


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 356 LLFSPLYNFFNNIGICCRFGKN*QLFYILVNFIIINCVVRFSTSTFVWM 210
           LLFS    F N   IC  +     LF+++  F+ + C V+ +     W+
Sbjct: 545 LLFSSTSQFGNITSICGLYALWISLFFVVELFLQVRCTVQLAYFLIAWI 593


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +3

Query: 216 YKSRSGKTNNTINDNKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLL-ENT--EVK 386
           ++ +  + + + ++++ D+N     V+  P + P    K   + K  KPLL ENT   VK
Sbjct: 93  FEMKEAEEHESSDESEADENASDCEVVESPESTPQSTPKRGGKKKISKPLLAENTPKSVK 152

Query: 387 -KGKEKSIL 410
             GK K ++
Sbjct: 153 MAGKSKKVI 161


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 228 SGKTNNTINDNKVDQNIKKLLVLSEPAADPNIVE--KIIQRAKKQKPLLENTEVKKGKEK 401
           +G  N+T+ D   +  IKK  V  EP A  + V   ++++R KK+K   +  + + G ++
Sbjct: 10  NGNGNSTVYDTNGNDEIKK-EVKDEPMASDSEVPFGELMKRDKKEKK-QKKRKAESGSDE 67

Query: 402 SILFPEEKQS 431
               PE+++S
Sbjct: 68  DDYKPEKRKS 77


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 228 SGKTNNTINDNKVDQNIKKLLVLSEPAADPNIVE--KIIQRAKKQKPLLENTEVKKGKEK 401
           +G  N+T+ D   +  IKK  V  EP A  + V   ++++R KK+K   +  + + G ++
Sbjct: 10  NGNGNSTVYDTNGNDEIKK-EVKDEPMASDSEVPFGELMKRDKKEKK-QKKRKAESGSDE 67

Query: 402 SILFPEEKQS 431
               PE+++S
Sbjct: 68  DDYKPEKRKS 77


>Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical
           protein F33H2.8 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 529 FILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKWFLLFCAVW 666
           ++L+S + +F++  L+ + +  L    +VY ++ N +  L  CA W
Sbjct: 255 YVLMSLSFIFMICNLYSHLWLTLSLSPSVYLVLENSRNLLASCAQW 300


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 228 SGKTNNTINDNKVDQNIKKLLVLSEPAADPNIVE--KIIQRAKKQKPLLENTEVKKGKEK 401
           +G  N+T+ D   +  IKK  V  EP A  + V   ++++R KK+K   +  + + G ++
Sbjct: 10  NGNGNSTVYDTNGNDEIKK-EVKDEPMASDSEVPFGELMKRDKKEKK-QKKRKAESGSDE 67

Query: 402 SILFPEEKQS 431
               PE+++S
Sbjct: 68  DDYKPEKRKS 77


>Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical
           protein K07F5.12 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 448 FSKS*NDCFSSGKRMDFSLPFFTSVFSSKGFCFLALCII 332
           + K  N    S +  D+  PF+TSVF      F A C+I
Sbjct: 220 YLKQQNPPTDSFQVFDYIFPFYTSVFLFSTLYFFAYCVI 258


>AF067213-1|AAC17000.2|  462|Caenorhabditis elegans Hypothetical
           protein T25B2.2 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +3

Query: 231 GKTNNTINDNKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKGKEKSI 407
           G+T   +    + Q +KK L   +P ADP+   ++ +    ++ +++  E K+ +E  I
Sbjct: 236 GRTLQKVMALFLKQKMKKSLAFFQPRADPHFDFELGKIIANRRKIVDEEETKRERENQI 294


>Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 516 SRGKIYINFYGHSIYFDHSLDKHIPIFG*RFC 611
           ++G  Y  ++G+ IYFD    K++P     FC
Sbjct: 262 NQGSWYATYFGNPIYFDTFKCKNLPALTCTFC 293


>Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical protein
            T22C1.10b protein.
          Length = 1291

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 255  DNKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQ 428
            D+ + +N+ K +V S P  D + +EK+  R   +    +  E  + K+  I FP++K+
Sbjct: 836  DSYIRENVAKWIV-STPI-DTDTIEKLFPRDPSENLAEKGNEEDRRKQMIIDFPDDKE 891


>Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical protein
            T22C1.10a protein.
          Length = 1307

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 255  DNKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQ 428
            D+ + +N+ K +V S P  D + +EK+  R   +    +  E  + K+  I FP++K+
Sbjct: 852  DSYIRENVAKWIV-STPI-DTDTIEKLFPRDPSENLAEKGNEEDRRKQMIIDFPDDKE 907


>Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical
           protein T05E11.2 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 460 QNNSFSKS*NDCFSSGKRMDFSLPFFTSVFSSKGFCFLALCIIFSTILGS 311
           +  S ++   DCF      DF L     + +S G C LA+C    TI  S
Sbjct: 57  EGGSHTQPSRDCFG-----DFELASIILISASLGCCILAICFAICTIFTS 101


>AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 516 SRGKIYINFYGHSIYFDHSLDKHIPIFG*RFC 611
           ++G  Y  ++G+ IYFD    K++P     FC
Sbjct: 262 NQGSWYATYFGNPIYFDTFKCKNLPALTCTFC 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,072,908
Number of Sequences: 27780
Number of extensions: 358031
Number of successful extensions: 1153
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)