Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h15
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              25   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.7  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 249 INDNKVDQNIKKLLVLSEPAADPNIVEKI 335
           +NDN+ DQ    LL    P +DPN + KI
Sbjct: 92  LNDNEADQ----LLAECSPISDPNALIKI 116


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 680 MKNSPQTAQNSRNHFGFGINS*TAESSSKNGYVF 579
           +KN     Q    HFG   NS     ++KNG  F
Sbjct: 216 IKNFDNCDQRINYHFGMTDNSRLEPGTNKNGKFF 249


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 585 IPIFG*RFCCL*IDPKSKVVSTIL 656
           +P+ G  F C+     S VVSTIL
Sbjct: 291 VPLLGTYFNCIMFMVASSVVSTIL 314


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 163 FSLLCSSGSTNSNACLIKAEDIF*D 89
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 163 FSLLCSSGSTNSNACLIKAEDIF*D 89
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 163 FSLLCSSGSTNSNACLIKAEDIF*D 89
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 163 FSLLCSSGSTNSNACLIKAEDIF*D 89
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 370 RTQK*KKVKKNPSFSLKKNNHFKTLKKNCFVAELHNYIKKYMY 498
           R+++ K +    + ++  NN++K    N +    +NY KK  Y
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,749
Number of Sequences: 438
Number of extensions: 4937
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)