Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h14
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   1.6  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.8  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    26   4.8  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   6.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.3  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    25   8.3  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 277 TIFHSNSTRLPTQAKV---APKLKDLE*LMPKNEQLLESMYVTKYLYF 143
           ++F SNST LP+  K+   APKL+    L+  N   L    +  Y  F
Sbjct: 286 SLFFSNSTPLPSSLKIKKEAPKLETHTILVSDNSGSLTKQDILSYFAF 333


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 403 DMRGYPHVDNFLRKIYPVIILGKSSLGWDLKFMKANWR 516
           D+    H+ ++LR ++P  ++GK +   D   +++N+R
Sbjct: 811 DLEMDSHLQDYLRSVFPSSVMGKENASED-TILESNFR 847


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  YRPDLSPSTDTEKNTSKDNVKNKGTWLHTST 174
           Y P    S  T +NTSK+ + +  T L+ +T
Sbjct: 635 YSPSHKDSNKTSRNTSKEGLPSSPTMLYRTT 665


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/59 (22%), Positives = 22/59 (37%)
 Frame = +3

Query: 249 RRVELEWKMVQTSSRCGYRMEQRTTPTETHYAPSTSGCYTNRNPCKKFRLPRHARIPTR 425
           RR+ L+W + +  S    R+  R           TS C+  ++   +  L      P R
Sbjct: 200 RRIALQWILGECKSSSPKRLSDRIVKEIIAIRSKTSNCFKKKDHLHRMCLVNRGNAPVR 258


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 64  SKRVLNYRPDLSPSTDTEKNTSKDNVKNKGTWLHTSTPT 180
           S+RVLN   D+SP  D+  +   D   N      T  PT
Sbjct: 115 SRRVLNLLEDMSPIADSHVDQISDIKHNTSEISSTMIPT 153


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 447 LPSDNSWQVISGLGLEIYEGQLASSF 524
           +PSDN  +V+     E ++  LASSF
Sbjct: 381 MPSDNYARVVESSTAEFFDPSLASSF 406


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  YRPDLSPSTDTEKNTSKDNVKNKGTWLHTST 174
           +RP LS STD + NTS + V  K     T T
Sbjct: 235 FRP-LSASTDKQSNTSLNRVLGKNRMPETQT 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,383
Number of Sequences: 5004
Number of extensions: 64572
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)