Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h14
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496     32   0.53 
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584...    30   1.6  
01_04_0056 + 15476868-15476896,15477581-15478259                       28   6.6  
05_05_0188 + 23102802-23102884,23103956-23104658                       28   8.7  
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489...    28   8.7  
02_05_0931 - 32812944-32813363,32814296-32814364,32814466-328145...    28   8.7  

>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
          Length = 428

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 1   EYESITVRETYNNFFCKNL*NSKRVLNYRPDLSPST---DTEKNTSKDNVKNKGTWLHTS 171
           ++ S+ V    + ++ +N  +S  +    P +SPST    T  N S DN  ++GT +H S
Sbjct: 236 DFNSMDVGNRNSLWYNQNESSSSTISTVMPPVSPSTLSTSTGLNPSPDNANSRGTGIHNS 295


>04_01_0450 -
           5840015-5840055,5840635-5840977,5841326-5841537,
           5842381-5842477
          Length = 230

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 239 LRGETGGVGMENGSNQQSLWLSHGAADNSYRDS 337
           LR   GG   +  S+++ +W  HGA    +RDS
Sbjct: 17  LRSGQGGDASDTDSDEEQMWHGHGAWGEEHRDS 49


>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 512 QLAFINFKSQPRDDLPRIITG 450
           +L FI  K +PR+DLPR++ G
Sbjct: 168 RLDFIGSKFRPREDLPRLLRG 188


>05_05_0188 + 23102802-23102884,23103956-23104658
          Length = 261

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = -1

Query: 661 ASPQHKTKMRR*TQGECPKPRDNGGSTASMSREREPQPSRVPHRG*KLDANWPS*ISSPN 482
           +S   K K  R   G+ P+P   GG+ A  SR  +  P        +    W S I  PN
Sbjct: 27  SSAARKKKQARAKNGDTPEPDAAGGARARASRRAKRGPGSYRGVRQRRWGKWVSEIREPN 86


>03_05_0996 -
           29547974-29547977,29548442-29548620,29548827-29548905,
           29549556-29549577,29550370-29550439,29550589-29550667,
           29551252-29551268,29552214-29552295,29553540-29553630,
           29554354-29554498,29554653-29554964
          Length = 359

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +3

Query: 222 LGATLACVGRRVELEWKMVQTSSRCGYRMEQRTTPTETHYAPSTSGCYTNRNPCKKFRLP 401
           +G  +   G+R E+   +V  S  CG R    +     H   S   C+ + + C  +RL 
Sbjct: 108 MGIAMVSCGQRGEMVAAIVAVS--CGQRGRDGSNNGWQHELESPDSCWAHPSICLFYRLA 165

Query: 402 RHARIPTRGQLFKENL 449
               +P+ G   +E L
Sbjct: 166 CSDLVPSSGLCTQELL 181


>02_05_0931 -
           32812944-32813363,32814296-32814364,32814466-32814572,
           32816676-32816718
          Length = 212

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 221 FGGYFGLRGETGGVG-MENGSNQQ 289
           F G+FG     GGVG M NGS Q+
Sbjct: 184 FSGHFGQASAQGGVGSMHNGSQQR 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,029,361
Number of Sequences: 37544
Number of extensions: 434779
Number of successful extensions: 1117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)